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基于经典热力学和统计热力学的药物再利用与药理多效性的统一解释

A Unified Explanation for Drug Repurposing and Pharmacological Pleiotropy Based on Classical and Statistical Thermodynamics.

作者信息

Head Richard, Islam Saiful, Martin Jennifer H

机构信息

Drug Discovery and Development, Clinical and Health Sciences, University of South Australia, Adelaide, South Australia, Australia.

Centre for Human Drug Repurposing and Medicines Research, University of Newcastle, New Lambton, New South Wales, Australia.

出版信息

Pharmacol Res Perspect. 2025 Aug;13(4):e70158. doi: 10.1002/prp2.70158.

Abstract

Drug repurposing is an authentic, emerging, and growing aspect of drug development when the demand for new therapeutic solutions is high. Many repurposed drugs have been discovered by serendipity or a non-ordered process driven by chance and sharp observation. These discoveries provide strong evidence for the existence of pharmacological pleiotropy, a highly ordered process well described by thermodynamics. Pleiotropy is an efficient way of propagating information and maintaining the specificity of a biological message and has been a cornerstone in genetics research over decades. While the definition, scale, diversity, and complexity associated with drug repurposing are well documented, pharmaceutical pleiotropy that is fundamental to our understanding of drug repurposing remains less explored. In this review, we examine pharmacological pleiotropy and its underpinning thermodynamics in drug repurposing. Additionally, we have drawn upon the universality of thermodynamics to provide insights into pharmaceutical pleiotropy. We suggest that, in serendipitous drug discovery, information in the repurposed drug often exceeds what was thought available with the rational design of the drug. Our interest in repurposing is on leveraging this information and knowledge generally once a therapeutic benefit from a new chemical entity (NCE) has been demonstrated. This requires a different process from standard drug discovery, and this repurposed pathway is the focus of our manuscript. In this review, we propose that drug repurposing can be defined using Information theory (Shannon entropy), Boltzmann statistical entropy, and the thermodynamic principles for spontaneity described by Gibbs free energy of binding. We conclude that therapeutics including repurposed drugs are facilitators of information and instructional transfer and that the distinguishing features of pharmacology, Information theory, and statistical mechanics are intimately linked. With advances in artificial intelligence and machine learning, with their strong links to Information theory and statistical mechanics, now is an appropriate time to further explore these relationships.

摘要

在对新型治疗方案需求高涨的情况下,药物重新利用是药物研发中一个切实、新兴且不断发展的领域。许多重新利用的药物是通过偶然发现或由机遇和敏锐观察驱动的非有序过程而被发现的。这些发现为药理多效性的存在提供了有力证据,药理多效性是一个由热力学很好描述的高度有序过程。多效性是传播信息和维持生物信息特异性的有效方式,并且在过去几十年一直是遗传学研究的基石。虽然与药物重新利用相关的定义、规模、多样性和复杂性已有充分记载,但对于我们理解药物重新利用至关重要的药物多效性仍较少被探索。在本综述中,我们研究了药物重新利用中的药理多效性及其基础热力学。此外,我们利用热力学的普遍性来深入了解药物多效性。我们认为,在偶然的药物发现中,重新利用的药物中的信息往往超过了通过药物合理设计所认为可获得的信息。我们对重新利用的兴趣在于,一旦新化学实体(NCE)的治疗益处得到证明,就利用这些信息和知识。这需要一个与标准药物发现不同的过程,而这条重新利用途径是我们手稿的重点。在本综述中,我们提出可以使用信息论(香农熵)、玻尔兹曼统计熵以及结合吉布斯自由能描述的自发热力学原理来定义药物重新利用。我们得出结论,包括重新利用的药物在内的治疗方法是信息和指令传递的促进者,并且药理学、信息论和统计力学的显著特征紧密相连。随着与信息论和统计力学有紧密联系的人工智能和机器学习的发展,现在是进一步探索这些关系的适当时机。

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