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胡萝卜加大棒:核糖核酸酶R如何影响翻译机器的功能及破坏作用

Carrot and stick: how RNase R contributes to function and destruction of the translation machinery.

作者信息

Paternoga Helge, Dimitrova-Paternoga Lyudmila

机构信息

Institute for Biochemistry and Molecular Biology, University of Hamburg, Hamburg, Germany.

出版信息

RNA Biol. 2025 Dec;22(1):1-22. doi: 10.1080/15476286.2025.2535846. Epub 2025 Jul 29.

DOI:10.1080/15476286.2025.2535846
PMID:40734258
Abstract

RNA is fundamental for life, and its homoeostasis is a critical contributor to cellular growth and adaptation to stress. Key RNA species include messenger RNA (mRNA) and non-coding RNAs, such as transfer RNA (tRNA), or ribosomal RNA (rRNA), that are essential for ribosome formation and translation of the genetic code. Furthermore, various other non-coding RNAs are expressed at each growth stage. Given RNA's abundance and its role in all cellular processes, RNases - enzymes responsible for RNA degradation and processing - are central to RNA metabolism. In this review, we discuss the pivotal contribution of the 3' exonuclease RNase R to bacterial RNA homoeostasis. We focus on its functions in regulating and degrading components of the translation machinery, including the trans-translation system, and we take a look at recent structural studies that shed new light on the activities of this important enzyme.

摘要

RNA 是生命的基础,其稳态是细胞生长和应激适应的关键因素。关键的 RNA 种类包括信使 RNA(mRNA)和非编码 RNA,如转运 RNA(tRNA)或核糖体 RNA(rRNA),它们对于核糖体形成和遗传密码的翻译至关重要。此外,在每个生长阶段都会表达各种其他非编码 RNA。鉴于 RNA 的丰富性及其在所有细胞过程中的作用,核糖核酸酶(负责 RNA 降解和加工的酶)是 RNA 代谢的核心。在本综述中,我们讨论了 3' 外切核酸酶核糖核酸酶 R 对细菌 RNA 稳态的关键贡献。我们重点关注其在调节和降解翻译机制组件(包括反式翻译系统)中的功能,并探讨了最近的结构研究,这些研究为这种重要酶的活性提供了新的见解。

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本文引用的文献

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Unconventional mRNA processing and degradation pathways for the polycistronic yrzI (spyTA) mRNA in Bacillus subtilis.枯草芽孢杆菌中多顺反子yrzI(spyTA)mRNA的非常规mRNA加工和降解途径。
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AcrIIIA1 is a protein-RNA anti-CRISPR complex that targets core Cas and accessory nucleases.AcrIIIA1是一种蛋白质-RNA抗CRISPR复合物,其靶向核心Cas和辅助核酸酶。
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Nucleotidyltransferase toxin MenT extends aminoacyl acceptor ends of serine tRNAs to control Mycobacterium tuberculosis growth.
核苷酸转移酶毒素 MenT 将丝氨酸 tRNA 的氨酰基接受末端延伸,以控制结核分枝杆菌的生长。
Nat Commun. 2024 Nov 6;15(1):9596. doi: 10.1038/s41467-024-53931-w.
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A new framework for SubtiWiki, the database for the model organism Bacillus subtilis.枯草芽孢杆菌模式生物数据库SubtiWiki的一个新框架。
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Revisiting the y-ome of Escherichia coli.重新审视大肠杆菌的 Y 染色体组。
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Identification of Ribonuclease Inhibitors for the Control of Pathogenic Bacteria.鉴定核糖核酸酶抑制剂以控制致病菌。
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A type II toxin-antitoxin system is responsible for the cell death at low temperature in Pseudomonas syringae Lz4W lacking RNase R.一种 II 型毒素-抗毒素系统负责缺乏 RNase R 的丁香假单胞菌 Lz4W 在低温下的细胞死亡。
J Biol Chem. 2024 Aug;300(8):107600. doi: 10.1016/j.jbc.2024.107600. Epub 2024 Jul 25.
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