编码用于乙醇胺代谢的Eut BMC的W4的全基因组序列。
Complete genome sequence of W4 encoding Eut BMC for ethanolamine metabolism.
作者信息
Wang Hongfei, Liu Kai, Deng Jingxuan, Gao Jian, Liao Mingjun
机构信息
Hubei Key Laboratory of Environmental Geotechnology and Ecological Remediation for Lake & River, Hubei University of Technology, Wuhan, China.
Hengzhen Wuxi Biotechnology Co, Ltd, Wuxi, China.
出版信息
Microbiol Resour Announc. 2025 Sep 11;14(9):e0017225. doi: 10.1128/mra.00172-25. Epub 2025 Jul 31.
Abstract
The strain W4 was isolated from a river water sample, and its complete genome sequence was determined. The genome encodes a functional Eut bacterial microcompartment for ethanolamine metabolism. Deciphering this genomic information is essential for optimizing high-biomass fermentation and advancing its application in wastewater treatment.
摘要
菌株W4是从河水样本中分离出来的，其完整的基因组序列已被测定。该基因组编码一个用于乙醇胺代谢的功能性Eut细菌微区室。解读这些基因组信息对于优化高生物量发酵并推进其在废水处理中的应用至关重要。
相似文献
1
Complete genome sequence of W4 encoding Eut BMC for ethanolamine metabolism.编码用于乙醇胺代谢的Eut BMC的W4的全基因组序列。
Microbiol Resour Announc. 2025 Sep 11;14(9):e0017225. doi: 10.1128/mra.00172-25. Epub 2025 Jul 31.
2
Integrative analysis of the ethanolamine utilization bacterial microcompartment in .整合分析. 中的乙醇胺利用细菌微隔间
mSystems. 2024 Aug 20;9(8):e0075024. doi: 10.1128/msystems.00750-24. Epub 2024 Jul 18.
3
Ability to use ITS and rbcL sequencing for determination of the genetic diversity and relationships among olive ( L.) genotypes.利用ITS和rbcL测序确定油橄榄（L.）基因型间遗传多样性及亲缘关系的能力。
3 Biotech. 2025 Jun;15(6):161. doi: 10.1007/s13205-025-04336-z. Epub 2025 May 12.
4
Bacterial microcompartment utilization in the human commensal Nissle 1917.人类共生菌1917株中细菌微区室的利用
J Bacteriol. 2024 Dec 19;206(12):e0026924. doi: 10.1128/jb.00269-24. Epub 2024 Dec 5.
5
Identical sequence types of Yersinia ruckeri associated with lethal disease in wild-caught invasive Blue Catfish and cultured hybrid catfish (Channel Catfish ♀ × Blue Catfish ♂) from disparate aquatic ecosystems.鲁氏耶尔森菌的相同序列类型与野生捕获的入侵蓝鲶以及来自不同水生生态系统的养殖杂交鲶鱼（沟鲶♀×蓝鲶♂）中的致死疾病有关。
J Aquat Anim Health. 2025 Apr 28;37(1):21-33. doi: 10.1093/jahafs/vsae004.
6
Multiplex PCR method for MinION sequencing of Bagaza virus isolated from wild caught mosquitoes in South Africa.用于从南非野外捕获的蚊子中分离的 Bagaza 病毒的 MinION 测序的多重 PCR 方法。
J Virol Methods. 2024 Jun;327:114917. doi: 10.1016/j.jviromet.2024.114917. Epub 2024 Mar 19.
7
An integrated multiphase dynamic genome-scale model explains batch fermentations led by species of the genus.一个集成的多相动态基因组规模模型解释了该属物种主导的分批发酵过程。
mSystems. 2025 Feb 18;10(2):e0161524. doi: 10.1128/msystems.01615-24. Epub 2025 Jan 22.
8
A novel Pseudomonas sp. strain with high flocculation efficiency for aquaculture wastewater treatment.一株对水产养殖废水具有高絮凝效率的新型假单胞菌属菌株。
Sci Rep. 2025 Jul 2;15(1):23577. doi: 10.1038/s41598-025-08584-0.
9
In Salmonella enterica, Ethanolamine Utilization Is Repressed by 1,2-Propanediol To Prevent Detrimental Mixing of Components of Two Different Bacterial Microcompartments.在肠炎沙门氏菌中，1,2 - 丙二醇会抑制乙醇胺的利用，以防止两种不同细菌微区室的成分发生有害混合。
J Bacteriol. 2015 Jul;197(14):2412-21. doi: 10.1128/JB.00215-15. Epub 2015 May 11.
10
Genomic characterization of an ESBL-producing ST37 recovered from a hospitalized patient in Armenia.从亚美尼亚一名住院患者身上分离出的产超广谱β-内酰胺酶的ST37菌株的基因组特征分析。
Microbiol Spectr. 2025 Jul 30:e0033225. doi: 10.1128/spectrum.00332-25.
本文引用的文献
1
eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale.eggNOG-mapper v2：宏基因组尺度的功能注释、直系同源物分配和结构域预测。
Mol Biol Evol. 2021 Dec 9;38(12):5825-5829. doi: 10.1093/molbev/msab293.
2
Ethanolamine bacterial microcompartments: from structure, function studies to bioengineering applications.乙醇胺细菌微区室：从结构、功能研究到生物工程应用
Curr Opin Microbiol. 2021 Aug;62:28-37. doi: 10.1016/j.mib.2021.04.008. Epub 2021 May 24.
3
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries.高通量 ANI 分析 9 万余组原核基因组揭示了清晰的物种界限。
Nat Commun. 2018 Nov 30;9(1):5114. doi: 10.1038/s41467-018-07641-9.
4
fastp: an ultra-fast all-in-one FASTQ preprocessor.fastp：一个超快速的一体化 FASTQ 预处理程序。
Bioinformatics. 2018 Sep 1;34(17):i884-i890. doi: 10.1093/bioinformatics/bty560.
5
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器：从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
6
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data.Artemis：一个用于可视化和分析高通量基于序列的实验数据的集成平台。
Bioinformatics. 2012 Feb 15;28(4):464-9. doi: 10.1093/bioinformatics/btr703. Epub 2011 Dec 22.
7
Competition for Ammonium between Nitrifying and Heterotrophic Bacteria in Dual Energy-Limited Chemostats.双能源限制恒化器中硝化菌和异养菌对铵的竞争。
Appl Environ Microbiol. 1991 Nov;57(11):3255-63. doi: 10.1128/aem.57.11.3255-3263.1991.
8
Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea.氨氧化细菌兼专性化能自养生物欧洲亚硝化单胞菌的全基因组序列。
J Bacteriol. 2003 May;185(9):2759-73. doi: 10.1128/JB.185.9.2759-2773.2003.
Zotero 插件