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使用全基因组测序对人分离株DP51进行特征分析。

Characterization of human isolate DP51 using whole genome sequencing.

作者信息

Liu Yanhong, Kanrar Siddhartha, He Yiping, Hussain Syed Ammar, Jin Tony Z, Johnson James R

机构信息

Department of Agriculture, Agricultural Research Service, Eastern Regional Research Center, Wyndmoor, Pennsylvania, USA.

Division of Infectious Diseases and International Medicine, Department of Medicine, University of Minnesota, Minneapolis, Minnesota, USA.

出版信息

Microbiol Resour Announc. 2025 Sep 11;14(9):e0050425. doi: 10.1128/mra.00504-25. Epub 2025 Jul 31.

DOI:10.1128/mra.00504-25
PMID:40744875
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12424306/
Abstract

The whole genome sequence of strain DP51 is reported here. DP51 was isolated in 2011 from a human rectal specimen in Breda, Netherlands. DP51 genome is 4.7 Mb with 50.68% GC content. DP51 possesses 34 extraintestinal virulence-related genes and is presumptive extraintestinal pathogenic (ExPEC).

摘要

本文报道了菌株DP51的全基因组序列。DP51于2011年从荷兰布雷达一名人类直肠标本中分离得到。DP51基因组大小为4.7 Mb，GC含量为50.68%。DP51拥有34个与肠外毒力相关的基因，被推测为肠外致病性（ExPEC）。

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本文引用的文献

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Microbiol Resour Announc. 2021 Feb 25;10(8):e01340-20. doi: 10.1128/MRA.01340-20.
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NAR Genom Bioinform. 2021 Jan 6;3(1):lqaa109. doi: 10.1093/nargab/lqaa109. eCollection 2021 Mar.
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Genotyping of Escherichia coli Isolates for Extraintestinal Virulence Genes by Use of Whole-Genome Sequencing Data.利用全基因组测序数据对大肠杆菌分离株进行肠道外毒力基因分型
J Clin Microbiol. 2020 Sep 22;58(10). doi: 10.1128/JCM.01269-20.
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Assembly of long, error-prone reads using repeat graphs.使用重复图组装长的、易错的读取。
Nat Biotechnol. 2019 May;37(5):540-546. doi: 10.1038/s41587-019-0072-8. Epub 2019 Apr 1.
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NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
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Circlator: automated circularization of genome assemblies using long sequencing reads.Circlator：利用长测序读段实现基因组组装的自动化环化
Genome Biol. 2015 Dec 29;16:294. doi: 10.1186/s13059-015-0849-0.
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J Clin Microbiol. 2015 Aug;53(8):2410-26. doi: 10.1128/JCM.00008-15. Epub 2015 May 13.
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Identification of acquired antimicrobial resistance genes.获得性抗菌耐药基因的鉴定。
J Antimicrob Chemother. 2012 Nov;67(11):2640-4. doi: 10.1093/jac/dks261. Epub 2012 Jul 10.
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Emerg Infect Dis. 2011 Jul;17(7):1216-22. doi: 10.3201/eid1707.110209.