数学建模表明,14-3-3蛋白可调节RAF反常激活。

Mathematical modeling suggests 14-3-3 proteins modulate RAF paradoxical activation.

作者信息

Mendiratta Gaurav, Abbott Kodye, Li Yao-Cheng, Yu Jingting, Carlip Peter, Tong Melinda, Huang Jianfeng, Shokhirev Maxim N, McFall Thomas, Wahl Geoffrey M, Stites Edward C

机构信息

Integrative Biology Laboratory, Salk Institute for Biological Studies, La Jolla, California, United States of America.

Department of Laboratory Medicine, Yale School of Medicine, New Haven, Connecticut, United States of America.

出版信息

PLoS Comput Biol. 2025 Aug 1;21(8):e1013297. doi: 10.1371/journal.pcbi.1013297. eCollection 2025 Aug.

Abstract

RAF inhibitor "paradoxical activation" (PA) is a phenomenon where RAF kinase inhibitors increase RAF kinase signaling. Through mathematical modeling and experimental data analysis, we recently demonstrated that the combination of conformational autoinhibition (CA) with the disruption of CA by RAF inhibitors plays an important role in PA. 14-3-3 proteins are known to modulate RAF CA and RAF dimerization. We here extend our mathematical model to include both roles of 14-3-3 proteins, and we derive rigorous analytical expressions of RAF signal regulation as modulated by 14-3-3 proteins. We then use the model to investigate how 14-3-3 proteins may modulate PA. We mathematically show 14-3-3 protein stabilization of the autoinhibited form of RAF should potentiate PA, while 14-3-3 protein stabilization of the active RAF dimer should reduce PA. Our analysis suggests that the net-effect will often be a potentiation of PA, and that 14-3-3 proteins may be capable of inducing PA for RAF inhibitors that normally show little to no PA. We test model-based insights experimentally with two different approaches: forced increases in 14-3-3 expression (which we find amplifies PA) and evolved resistance assays (which suggest increased 14-3-3 expression may contribute to resistance to RAF inhibitors). Overall, this work supports a role for 14-3-3 in modulating RAF-inhibitor mediated paradoxical activation.

摘要

RAF抑制剂“反常激活”(PA)是一种RAF激酶抑制剂增加RAF激酶信号传导的现象。通过数学建模和实验数据分析,我们最近证明,构象自抑制(CA)与RAF抑制剂对CA的破坏相结合在PA中起重要作用。已知14-3-3蛋白可调节RAF的CA和RAF二聚化。我们在此扩展我们的数学模型,以纳入14-3-3蛋白的这两种作用,并推导由14-3-3蛋白调节的RAF信号调节的严格解析表达式。然后,我们使用该模型研究14-3-3蛋白如何调节PA。我们通过数学方法表明,14-3-3蛋白使RAF自抑制形式稳定应增强PA,而14-3-3蛋白使活性RAF二聚体稳定应降低PA。我们的分析表明,净效应通常会增强PA,并且14-3-3蛋白可能能够诱导通常几乎不显示或不显示PA的RAF抑制剂产生PA。我们用两种不同的方法对基于模型的见解进行了实验测试:强制增加14-3-3表达(我们发现这会放大PA)和进化抗性测定(这表明14-3-3表达增加可能导致对RAF抑制剂的抗性)。总体而言,这项工作支持14-3-3在调节RAF抑制剂介导的反常激活中的作用。

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