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从淡水中分离出的色素产生需氧细菌ME4的基因组序列

Genome sequence of ME4, a pigmented, aerobic bacterium isolated from freshwater.

作者信息

Abramczuk Victoria, Saionz Virginia, Estevez Maria, Stowe Emily

机构信息

Department of Biology, Bucknell University, Lewisburg, Pennsylvania, United States.

出版信息

MicroPubl Biol. 2025 Jul 18;2025. doi: 10.17912/micropub.biology.001660. eCollection 2025.

DOI:10.17912/micropub.biology.001660
PMID:40756271
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12314660/
Abstract

is a metabolically diverse genus found in a range of habitats. Here we describe ME4, a carotenoid-producing, aerobic bacterium isolated from freshwater. The genome contains 4,061,481 bases in five contigs with 4,028 protein-coding genes, 106 tRNA and rRNA genes, and 35 pseudogenes.

摘要

是一个代谢多样的属,存在于一系列生境中。在这里,我们描述了ME4,一种从淡水中分离出的产类胡萝卜素的需氧细菌。该基因组由5个重叠群组成,包含4,061,481个碱基,有4,028个蛋白质编码基因、106个tRNA和rRNA基因以及35个假基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9537/12314660/2bb321052d3c/25789430-2025-micropub.biology.001660.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9537/12314660/2bb321052d3c/25789430-2025-micropub.biology.001660.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9537/12314660/2bb321052d3c/25789430-2025-micropub.biology.001660.jpg

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本文引用的文献

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Recent progress in carotenoid encapsulation: Effects on storage stability, bioaccessibility and bioavailability for advanced innovative food applications.类胡萝卜素包封技术的最新进展:对高级创新食品应用中储存稳定性、生物可及性和生物利用度的影响
Food Res Int. 2025 Feb;203:115861. doi: 10.1016/j.foodres.2025.115861. Epub 2025 Jan 30.
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Carotenoid-Producing sp. nov., Isolated from the West Coast of Dokdo Island, Republic of Korea.
产类胡萝卜素 sp. nov.,分离自韩国独岛西海岸。
J Microbiol Biotechnol. 2024 Oct 28;34(10):2012-2022. doi: 10.4014/jmb.2404.04053. Epub 2024 Aug 9.
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Optimization of media components for enhanced carotenoid production by RSPO1 and assessment of their cytotoxicity against A549 and vero cells.优化培养基成分以提高RSPO1 产生类胡萝卜素的水平,并评估其对 A549 和 vero 细胞的细胞毒性。
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Pan-genome analysis of six Paracoccus type strain genomes reveal lifestyle traits.六株副球菌模式菌株的泛基因组分析揭示了其生活方式特征。
PLoS One. 2023 Dec 20;18(12):e0287947. doi: 10.1371/journal.pone.0287947. eCollection 2023.
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Proksee: in-depth characterization and visualization of bacterial genomes.Proksee:细菌基因组的深入特征描述和可视化。
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Harnessing taxonomically diverse and metabolically versatile genus Paracoccus for bioplastic synthesis and xenobiotic biodegradation.利用分类多样且代谢多样的副球菌属进行生物塑料合成和异生物质生物降解。
J Appl Microbiol. 2022 Jun;132(6):4208-4224. doi: 10.1111/jam.15530. Epub 2022 Mar 29.
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Phylogenomic Framework for Taxonomic Delineation of spp. and Exploration of Core-Pan Genome.用于 spp. 分类界定及核心-泛基因组探索的系统发育基因组框架。
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