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丙酮酸和酒酮酸酮-烯醇互变异构的气相和水相计算:对益生元烯醇磷酸酯的影响

Gas and Aqueous Phase Computations on the Keto-Enol Tautomerization of Pyruvic and Zymonic Acids: Implications for Prebiotic Enol Phosphates.

作者信息

Bera Partha P, Wilson Michael A, Pohorille Andrew, Lee Timothy J, Shraim Nourdean, Rios Andro C

机构信息

NASA Ames Research Center, MS 245-6, Moffett Field, California 94035, United States.

Bay Area Environmental Research Institute, MS 18-4, Moffett Field, California 94035, United States.

出版信息

J Phys Chem A. 2025 Aug 14;129(32):7287-7295. doi: 10.1021/acs.jpca.5c01351. Epub 2025 Aug 5.

DOI:10.1021/acs.jpca.5c01351
PMID:40762600
Abstract

Keto-enol tautomerism plays a very important role in pyruvate chemistry and metabolic transformations. The enol form of pyruvate is thermodynamically much less stable, and its tautomerization to the keto form is one of the strongly favored energetic single rearrangements, endowing phosphoenolpyruvate as one of the most potent phosphate donors in biology. In this work, we report the keto-enol rearrangement of pyruvate and pyruvate-derived compounds, such as zymomate, using high-quality density functional theory for the gas phase and molecular dynamics methods for the aqueous phase. Our results indicate a preference for the keto tautomer of pyruvic acid and pyruvate both in the gas as well as in the aqueous phase. Zymonic acid prefers to be in the enol form in gas as well as in an aqueous medium. Tautomerization contributes approximately 42% of the energetic driving force in the hydrolysis of phosphenol pyruvate. Keto tautomer of zymonate, however, is lower in energy in the gas phase, while the enol tautomer, due to its strong solvation free energy, is lower in energy in the aqueous phase. The results of our work are also discussed in the context of astrobiology, where we explore how fundamental carbonyl chemistry such as keto-enol tautomerization reactions may have influenced the selection of phosphoenolpyruvate. We propose a scenario for how the emergence of PEP might have taken place through a process of chemical evolution originating from a wider variety of possible enol phosphates operating within a proto-metabolism.

摘要

酮-烯醇互变异构在丙酮酸化学和代谢转化中起着非常重要的作用。丙酮酸的烯醇形式在热力学上稳定性要低得多,其向酮形式的互变异构是最有利的能量单重重排之一,使磷酸烯醇丙酮酸成为生物学中最强效的磷酸供体之一。在这项工作中,我们使用气相的高质量密度泛函理论和水相的分子动力学方法,报道了丙酮酸和丙酮酸衍生化合物(如丙酮酸甲酯)的酮-烯醇重排。我们的结果表明,无论是在气相还是水相中,丙酮酸和丙酮酸根都更倾向于酮互变异构体。丙酮酸甲酯在气相以及水介质中都更倾向于烯醇形式。互变异构在磷酸烯醇丙酮酸水解的能量驱动力中约占42%。然而,丙酮酸甲酯的酮互变异构体在气相中的能量较低,而烯醇互变异构体由于其强大的溶剂化自由能,在水相中的能量较低。我们还在天体生物学的背景下讨论了我们的工作结果,在天体生物学中,我们探讨了诸如酮-烯醇互变异构反应等基本羰基化学如何可能影响了磷酸烯醇丙酮酸的选择。我们提出了一个关于磷酸烯醇丙酮酸可能如何通过源自原代谢中多种可能的烯醇磷酸酯的化学进化过程而出现的设想。

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