Tarafder Abul K, Graham Miles, Davis Luke K, Pratt Shawna, Böhning Jan, Manivannan Pavithra, Wang Zhexin, Clemente Camila M, Owens Raymond J, O'Toole George A, Pearce Philip, Bharat Tanmay A M
Structural Studies Division, MRC Laboratory of Molecular Biology; Francis Crick Avenue, Cambridge CB2 0QH, United Kingdom.
School of Mathematics, University of Edinburgh, Edinburgh, EH9 3FD, United Kingdom.
bioRxiv. 2025 Jul 28:2025.07.28.667140. doi: 10.1101/2025.07.28.667140.
All bacterial biofilms contain an extracellular matrix rich in filamentous molecules 1 that self-associate , conferring emergent properties to bacteria 5, including antibiotic tolerance 6. is a human pathogen that forms biofilms in diverse infectious settings , where the upregulation of a filamentous bacteriophage Pf4, has been shown to be a key virulence factor that protects bacteria from antibiotics . Here, we modelled biophysical characteristics of biofilm-linked liquid crystalline droplets formed by Pf4, which predicted that sub-stoichiometric phage binders had the ability to disrupt liquid crystals by changing the surface properties of the phage. We tested this prediction by developing nanobodies targeting the outer surface of the Pf4 phage, which disrupted reconstituted droplets, promoted antibiotic diffusion into bacteria, disrupted biofilm formation under a variety of conditions, and abolished antibiotic tolerance of biofilms. The inhibition strategy illustrated in this study could be extended to biofilms of other pathogenic bacteria, where filamentous molecules are pervasive in the extracellular matrix. Furthermore, our findings exemplify how targeting a biophysical mechanism, rather than a defined biochemical target, is a promising avenue for intervention, with the potential of applying this concept to other disease-related contexts.
所有细菌生物膜都含有富含丝状分子的细胞外基质,这些分子会自我缔合,赋予细菌一些新特性,包括抗生素耐受性。是一种人类病原体,在多种感染环境中形成生物膜,其中丝状噬菌体Pf4的上调已被证明是保护细菌免受抗生素影响的关键毒力因子。在这里,我们对由Pf4形成的生物膜连接液晶液滴的生物物理特性进行了建模,预测亚化学计量的噬菌体结合剂能够通过改变噬菌体的表面特性来破坏液晶。我们通过开发针对Pf4噬菌体外表面的纳米抗体来验证这一预测,这些纳米抗体破坏了重构液滴,促进了抗生素向细菌内扩散,在各种条件下破坏了生物膜形成,并消除了生物膜的抗生素耐受性。本研究中阐述的抑制策略可扩展到其他致病细菌的生物膜,其中丝状分子在细胞外基质中普遍存在。此外,我们的研究结果表明,针对生物物理机制而非特定生化靶点是一种有前景的干预途径,有可能将这一概念应用于其他疾病相关背景。