Pun Manoj, Galsurker Ortal, Khazanov Netaly, Charkowski Amy, Yelin Shani, Kerem Zohar, Weitman Michal, Senderowitz Hanoch, Yedidia Iris
The Institute of Plant Sciences, Volcani Center, Agricultural Research Organization (ARO), 7528809 Rishon Lezion, Israel.
The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, 76100 Rehovot, Israel.
J Agric Food Chem. 2025 Aug 20;73(33):20792-20809. doi: 10.1021/acs.jafc.5c04312. Epub 2025 Aug 6.
Naringenin, a flavanone from citrus, was studied for its ability to reduce virulence in , a phytopathogen causing soft rot disease in crop plants. Naringenin downregulated quorum sensing (QS) and suppressed critical virulence determinants in Pb1692, including plant cell wall-degrading enzymes, bacterial motility, and biofilm formation, consequently reducing disease symptoms in two host plants. Molecular docking simulations revealed a plausible binding mode for naringenin within the QS protein ExpI, which were maintained during microsecond-long Molecular Dynamics simulations. These simulations provided atomic-scale insight into specific interactions and estimated binding free energies, supporting naringenin's QS inhibition mode of action. In contrast, -adenosyl methionine, the natural ligand of ExpI, was unable to maintain a stable binding mode in the ExpI site during simulations. Beyond QS disruption, naringenin induced reactive oxygen species accumulation and compromised DNA repair, indicating a multimodal mechanism of action. Despite these promising findings, naringenin's limited aqueous solubility challenges practical applications.
柚皮素是一种来自柑橘的黄烷酮,研究了其降低引起作物软腐病的植物病原体——的毒力的能力。柚皮素下调群体感应(QS)并抑制Pb1692中的关键毒力决定因素,包括植物细胞壁降解酶、细菌运动性和生物膜形成,从而减轻了两种寄主植物的病害症状。分子对接模拟揭示了柚皮素在QS蛋白ExpI内的一种合理结合模式,这种模式在长达微秒的分子动力学模拟中得以维持。这些模拟提供了对特定相互作用的原子尺度洞察并估计了结合自由能,支持柚皮素的QS抑制作用模式。相比之下,ExpI的天然配体——腺苷甲硫氨酸在模拟过程中无法在ExpI位点维持稳定的结合模式。除了破坏QS外,柚皮素还诱导活性氧积累并损害DNA修复,表明其具有多模式作用机制。尽管有这些有前景的发现,但柚皮素有限的水溶性对实际应用提出了挑战。