Schaedel Marie, Koechli Chantal, Buckley Daniel H
Soil and Crop Sciences, Department of Integrative Plant Science, Cornell University, Ithaca, New York, USA.
Appl Environ Microbiol. 2025 Sep 17;91(9):e0093325. doi: 10.1128/aem.00933-25. Epub 2025 Aug 6.
Microbial growth dynamics determine carbon fate in soil by transforming carbon inputs into microbial products available for stabilization on soil surfaces. Management practices such as tillage disturb microbial communities and promote C loss, but the degree to which tillage alters bacterial metabolism of soil C remains poorly described. We conducted a multi-substrate DNA stable isotope probing experiment using soil from a long-term field experiment with a 42-year legacy of either no-till or annual moldboard plowing. We predicted that this land use history would alter C assimilation dynamics due to differences in bacterial growth responses. We incubated soil from each tillage regime with C-xylose and C-cellulose, substrates that differ in bioavailability and which favor different bacterial life history strategies in soil. We identified 730 C-labeled bacterial taxa and tracked their abundance in bulk soil over a 30 day period. Carbon addition to soil rapidly altered bacterial community structure and function. C-labeling dynamics differed substantially between tilled and no-till soils with respect to both xylose and cellulose. Bacterial xylose metabolism in tilled soils exhibited substantial lag relative to no-till soils, and this lag corresponded with lower mineralization rates for xylose. In addition, bacterial cellulose metabolism was mediated primarily by specialist taxa in no-till soils, while dual incorporators dominated tilled soils. Differences in carbon assimilation corresponded to lower cellulose mineralization rates and cumulative cellulose mineralization in tilled soils. We show that soil management practices shape the path of carbon through bacterial communities by altering dynamic growth responses associated with bacterial life history strategies.IMPORTANCEWe applied DNA stable isotope probing in a microcosm experiment to understand the role of soil management (till vs no-till) in shaping bacterial carbon cycling. Our hypothesis was that a legacy of disturbance through tillage would exert a selective influence on bacterial growth dynamics, thereby altering bacterial processing of added carbon substrates. We found that lagged growth in tilled soil resulted in delayed bacterial assimilation of xylose and a streamlined, single carbon "channel" characterized by the co-metabolism of xylose and cellulose. In no-till soil, temporally distinct bacterial assimilation of xylose and cellulose by separate carbon "channels" was associated with higher carbon mineralization rates and total mineralization relative to tilled soil. Our findings indicate that soil management practices altered the growth dynamics of active carbon cycling bacteria. Lagged growth associated with a history of disturbance resulted in reduced carbon mineralization.
微生物生长动态通过将碳输入转化为可在土壤表面稳定的微生物产物来决定土壤中的碳归宿。诸如耕作等管理措施会扰乱微生物群落并促进碳损失,但耕作改变土壤碳细菌代谢的程度仍鲜有描述。我们利用长期田间试验的土壤进行了一项多底物DNA稳定同位素示踪实验,该试验有42年免耕或每年铧式犁翻耕的历史。我们预测这种土地利用历史会因细菌生长反应的差异而改变碳同化动态。我们将来自每种耕作方式的土壤与碳木糖和碳纤维素一起培养,这两种底物的生物可利用性不同,且有利于土壤中不同的细菌生活史策略。我们鉴定出730个被碳标记的细菌分类群,并在30天内跟踪它们在原状土中的丰度。向土壤中添加碳迅速改变了细菌群落结构和功能。在木糖和纤维素方面,耕作土壤和免耕土壤中的碳标记动态存在显著差异。与免耕土壤相比,耕作土壤中的细菌木糖代谢表现出明显的滞后,这种滞后与木糖较低的矿化率相对应。此外,免耕土壤中细菌纤维素代谢主要由专性分类群介导,而在耕作土壤中双同化者占主导。碳同化的差异对应于耕作土壤中较低的纤维素矿化率和累积纤维素矿化量。我们表明,土壤管理措施通过改变与细菌生活史策略相关的动态生长反应来塑造碳在细菌群落中的路径。
重要性
我们在微观实验中应用DNA稳定同位素示踪来了解土壤管理(耕作与免耕)在塑造细菌碳循环中的作用。我们的假设是,通过耕作造成的干扰遗留会对细菌生长动态产生选择性影响,从而改变添加碳底物的细菌加工过程。我们发现,耕作土壤中的生长滞后导致细菌对木糖的同化延迟,以及以木糖和纤维素的共代谢为特征的简化单一碳“通道”。在免耕土壤中,木糖和纤维素通过不同碳“通道”在时间上不同的细菌同化与相对于耕作土壤更高的碳矿化率和总矿化量相关。我们的研究结果表明,土壤管理措施改变了活跃碳循环细菌的生长动态。与干扰历史相关的生长滞后导致碳矿化减少。