土壤微生物组中的生死:生态过程如何影响生物地球化学。
Life and death in the soil microbiome: how ecological processes influence biogeochemistry.
机构信息
Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, CA, USA.
Earth and Environmental Sciences, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
出版信息
Nat Rev Microbiol. 2022 Jul;20(7):415-430. doi: 10.1038/s41579-022-00695-z. Epub 2022 Feb 28.
Soil microorganisms shape global element cycles in life and death. Living soil microorganisms are a major engine of terrestrial biogeochemistry, driving the turnover of soil organic matter - Earth's largest terrestrial carbon pool and the primary source of plant nutrients. Their metabolic functions are influenced by ecological interactions with other soil microbial populations, soil fauna and plants, and the surrounding soil environment. Remnants of dead microbial cells serve as fuel for these biogeochemical engines because their chemical constituents persist as soil organic matter. This non-living microbial biomass accretes over time in soil, forming one of the largest pools of organic matter on the planet. In this Review, we discuss how the biogeochemical cycling of organic matter depends on both living and dead soil microorganisms, their functional traits, and their interactions with the soil matrix and other organisms. With recent omics advances, many of the traits that frame microbial population dynamics and their ecophysiological adaptations can be deciphered directly from assembled genomes or patterns of gene or protein expression. Thus, it is now possible to leverage a trait-based understanding of microbial life and death within improved biogeochemical models and to better predict ecosystem functioning under new climate regimes.
土壤微生物塑造了生命与死亡中的全球元素循环。有生命的土壤微生物是陆地生物地球化学的主要引擎,推动着土壤有机质的转化——这是地球上最大的陆地碳库,也是植物养分的主要来源。它们的代谢功能受到与其他土壤微生物种群、土壤动物和植物以及周围土壤环境的生态相互作用的影响。死微生物细胞的残余物是这些生物地球化学引擎的燃料,因为它们的化学成分作为土壤有机质而存在。随着时间的推移,这种非活体微生物生物量在土壤中积累,形成了地球上最大的有机质库之一。在这篇综述中,我们讨论了有机质的生物地球化学循环如何依赖于活的和死的土壤微生物、它们的功能特征,以及它们与土壤基质和其他生物体的相互作用。随着组学技术的最新进展,许多构成微生物种群动态及其生理生态适应的特征可以直接从组装的基因组或基因或蛋白质表达模式中破译出来。因此,现在可以利用基于特征的微生物生与死的理解来改进生物地球化学模型,并更好地预测新气候条件下的生态系统功能。