Dahal Pawan, Wang Yan, Hu Jianhong, Park Jeongmoo, Forker Karly, Zhang Zhong-Lin, Sharma Kedar, Borgnia Mario J, Sun Tai-Ping, Zhou Pei
Department of Biochemistry, Duke University School of Medicine, Durham, NC 27710.
Department of Biology, Duke University, Durham, NC 27708.
Proc Natl Acad Sci U S A. 2025 Aug 12;122(32):e2511012122. doi: 10.1073/pnas.2511012122. Epub 2025 Aug 6.
The perception of the phytohormone gibberellin (GA) by its nuclear receptor GIBBERELLIN INSENSITIVE DWARF1 (GID1) triggers polyubiquitination and proteasomal degradation of master growth regulators-DELLA proteins-mediated by the SCF E3 ubiquitin ligase complex. DELLA-encoding genes are known as 'Green Revolution' genes, as their dominant mutations lead to semidwarf cereal varieties with significantly higher yields due to reduced GA response. DELLAs function as central signaling hubs, coordinating diverse physiological responses by interacting with key transcription factors across multiple cellular pathways. While the DELLA domain mediates GA-GID1 binding, the mechanism of SCF recruitment remained unknown. Additionally, GA-GID1 binding can inhibit DELLA protein activity independently of its proteolysis, although the underlying mechanism was unclear. Here, we present the cryo-EM structures of GA-GID1A complexed with a full-length DELLA protein in , RGA (REPRESSOR OF ), and the GA-GID1A-RGA-SLY1-ASK1 complex. We show that the DELLA domain of RGA functions as a molecular bridge to enhance its GRAS domain binding to GID1A through direct interactions with both the GRAS domain and GID1A. Disrupting either intramolecular (DELLA-GRAS) or intermolecular (GRAS-GID1A) interactions weakens RGA-GID1 binding. Contrary to prior models, SLY1 binds the GRAS domain's concave surface without inducing conformational changes. Combining AlphaFold modeling and yeast three-hybrid assays, we demonstrate that GID1 binding to the RGA GRAS domain blocks its interactions with INDETERMINATE DOMAIN (IDD) transcription factors, explaining how GA-GID1 relieves growth suppression independently of DELLA degradation.
植物激素赤霉素(GA)通过其核受体赤霉素不敏感矮化1(GID1)被感知,引发由SCF E3泛素连接酶复合物介导的主生长调节因子——DELLA蛋白的多聚泛素化和蛋白酶体降解。编码DELLA的基因被称为“绿色革命”基因,因为它们的显性突变会导致半矮秆谷类品种,由于GA反应降低,产量显著提高。DELLA作为核心信号枢纽,通过与多个细胞途径中的关键转录因子相互作用来协调多种生理反应。虽然DELLA结构域介导GA-GID1结合,但SCF募集的机制仍然未知。此外,GA-GID1结合可以独立于其蛋白水解作用抑制DELLA蛋白活性,尽管其潜在机制尚不清楚。在这里,我们展示了GA-GID1A与全长DELLA蛋白、RGA(REPRESSOR OF)以及GA-GID1A-RGA-SLY1-ASK1复合物复合的冷冻电镜结构。我们表明,RGA的DELLA结构域作为分子桥,通过与GRAS结构域和GID1A直接相互作用,增强其GRAS结构域与GID1A的结合。破坏分子内(DELLA-GRAS)或分子间(GRAS-GID1A)相互作用会削弱RGA-GID1结合。与先前的模型相反,SLY1结合GRAS结构域的凹面而不诱导构象变化。结合AlphaFold建模和酵母三杂交试验,我们证明GID1与RGA GRAS结构域的结合阻断了其与不定域(IDD)转录因子的相互作用,解释了GA-GID1如何独立于DELLA降解解除生长抑制。