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从海洋海岸沉积物中分离出的六个新细菌物种,基于基因组分析进行了重新分类并命名为新组合。

Six new bacterial species of isolated from the marine coastal sediment and reclassified and as comb. nov. based on the genome analysis.

作者信息

Zhang Han-Zhe, Teng Jin-Hao, Zhou Hao-Yu, Liu Tian-He, Lu De-Chen, Du Zong-Jun

机构信息

Marine College, Shandong University, Weihai, China.

Joint Science College, Shandong University, Weihai, China.

出版信息

Front Microbiol. 2025 Jul 23;16:1634775. doi: 10.3389/fmicb.2025.1634775. eCollection 2025.

Abstract

Evaluation of bacterial succession with cultivation-dependent strategies during enrichment culturing marine sediment led to the isolation of six strains that affiliated with the order . Six strains were selected for a taxonomic study after discarding clonal cultures. A thorough phylogenetic, genomic and phenotypic analysis of the isolates indicated that they represented six new species. Molecular data revealed the existence of an as yet uncultivated novel species recurrently binned from the enrichment culturing metagenomes. Using a combination of genomic, phylogenetic, and biochemical approaches, we characterized six novel species capable of degrading marine macroalgal polysaccharides. Bioinformatic polysaccharide utilization loci (PUL) annotations suggest usage of a large array of polysaccharides, including laminarin, α-glucans, and alginate as well as mannans and fucans, highlighting the genus' involvement in the marine carbon cycle. This study represented a new example of the use of the tandem approach of whole cell mass spectrometry linked to 16S rRNA gene sequencing in order to facilitate the discovery of new taxa by high-throughput cultivation, which increases the probability of finding more than a single isolate for new species. Analysis of CAZymes genes and PUL counts revealed substantial potential for polysaccharide utilization of . The taxonomic study resulted in the classification of six new species and reclassified and as of the order for which we propose the names sp. nov., sp. nov., sp. nov., sp. nov., sp. nov., and sp. nov.

摘要

在对海洋沉积物进行富集培养过程中,采用依赖培养的策略评估细菌演替,从而分离出六株隶属于该目的菌株。在剔除克隆培养物后,选择了六株菌株进行分类学研究。对这些分离株进行全面的系统发育、基因组和表型分析表明,它们代表六个新物种。分子数据显示,在富集培养宏基因组中反复出现一种尚未培养的新物种。我们结合基因组、系统发育和生化方法,对六种能够降解海洋大型藻类多糖的新物种进行了表征。生物信息学多糖利用位点(PUL)注释表明,该菌能利用多种多糖,包括海带多糖、α-葡聚糖、藻酸盐以及甘露聚糖和岩藻聚糖,突出了该属在海洋碳循环中的作用。本研究展示了一个新的实例,即采用全细胞质谱与16S rRNA基因测序相结合的串联方法,通过高通量培养促进新分类群的发现,这增加了为新物种找到多个分离株的可能性。对碳水化合物活性酶基因和PUL计数的分析揭示了该菌在多糖利用方面具有巨大潜力。分类学研究结果将六个新物种进行了分类,并将 和 重新分类为 目,我们为此提议命名为 新种、 新种、 新种、 新种、 新种和 新种。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fffc/12325347/90266837b5c1/fmicb-16-1634775-g001.jpg

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