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新种、新种和新种,从泥滩沉积物中分离出的三种新型几丁质降解放线菌。

sp. nov., sp. nov. and sp. nov., three novel chitin-degrading actinobacteria isolated from a mudflat sediment.

作者信息

Xu Qing-Yu, Lu Chun-Yan, Gao Lei, Wu Dildar, Li Xin-Yao, Liu Yong-Hong, Zhang Yao, Chen Yue-Heng, She Ting-Ting, Fang Bao-Zhu, Li Wen-Jun

机构信息

State Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, PR China.

University of Chinese Academy of Sciences, Beijing 100049, PR China.

出版信息

Int J Syst Evol Microbiol. 2025 Jul;75(7). doi: 10.1099/ijsem.0.006831.

Abstract

Three strains of actinobacteria, designated as SYSU T00194, SYSU T00242 and SYSU T00266, were isolated from tidal flat sediment samples in Zhanjiang, PR China. The taxonomic position of three isolates was determined using polyphasic taxonomic analysis and phylogenomic analysis. Phylogenetic analysis and 16S rRNA gene sequence comparisons indicated that strain SYSU T00194 formed a distinct clade with IFO 16236 and shared a sequence identity value of 97.9%. As well as strains SYSU T00242 and SYSU T00266, which formed a distinct clade with CGMCC 4.1717, exhibiting sequence identity values of 97.7 and 97.6%, respectively. Furthermore, they also exhibited a closer phylogenetic relationship with IFO 16235, as determined by phylogenomic analysis, with average nucleotide identity values of 86.1 and 91.1%, respectively. These novel isolates could be distinguished from species in the genus by their distinct phenotypic and genotypic characteristics. The cells of three novel strains were aerobic, Gram-stain-positive and short rod-shaped. Optimal growth conditions of strains SYSU T00194, SYSU T00242 and SYSU T00266 occurred on the marine agar 2216 with pH 8.0 at 37 °C. In addition, the major fatty acids of SYSU T00194, SYSU T00242 and SYSU T00266 were iso-C, anteiso-C and anteiso-C. The major polar lipids included diphosphatidylglycerol (DPG), phosphatidylglycerol (PG) and glycolipid (GL). According to the phenotypic, genotypic and phylogenetic data, strains SYSU T00194, SYSU T00242 and SYSU T00266 represent three novel species of the genus , for which the names sp. nov., sp. nov. and sp. nov. are proposed, respectively. The type strains of the proposed three novel isolates are SYSU T00194 (=MCCC 1K09402=KCTC 59364), SYSU T00242 (=GDMCC 1.3836=KCTC 44948) and SYSU T00266 (=GDMCC 1.3835=KCTC 49949), respectively.

摘要

从中国广东省湛江市潮滩沉积物样本中分离出三株放线菌,分别命名为SYSU T00194、SYSU T00242和SYSU T00266。采用多相分类分析和系统发育基因组分析确定了这三株分离菌的分类地位。系统发育分析和16S rRNA基因序列比较表明,菌株SYSU T00194与IFO 16236形成一个独特的分支,序列同一性值为97.9%。同样,菌株SYSU T00242和SYSU T00266与CGMCC 4.1717形成一个独特的分支,序列同一性值分别为97.7%和97.6%。此外,通过系统发育基因组分析确定,它们与IFO 16235也表现出更密切的系统发育关系,平均核苷酸同一性值分别为86.1%和91.1%。这些新分离株可通过其独特的表型和基因型特征与该属中的其他物种区分开来。这三株新菌株为需氧菌,革兰氏染色阳性,呈短杆状。菌株SYSU T00194、SYSU T00242和SYSU T00266的最佳生长条件为在pH 8.0的海洋琼脂2216上,温度为37°C。此外,SYSU T00194、SYSU T00242和SYSU T00266的主要脂肪酸为异-C、anteiso-C和anteiso-C。主要极性脂包括双磷脂酰甘油(DPG)、磷脂酰甘油(PG)和糖脂(GL)。根据表型、基因型和系统发育数据,菌株SYSU T00194、SYSU T00242和SYSU T00266代表该属的三个新物种,分别提议命名为 sp. nov.、 sp. nov.和 sp. nov.。提议的这三个新分离株的模式菌株分别为SYSU T00194(=MCCC 1K09402=KCTC 59364)、SYSU T00242(=GDMCC 1.3836=KCTC 44948)和SYSU T00266(=GDMCC 1.3835=KCTC 49949)。

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