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植物中的核糖体生物合成需要定位于核膜和线粒体的OPENER复合体。

Ribosome biogenesis in plants requires the nuclear envelope and mitochondria localized OPENER complex.

作者信息

Wang Wei, Mahboubi Amir, Zhu Shaochun, Hanson Johannes, Mateus André, Niittylä Totte

机构信息

Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 90183, Umeå, Sweden.

Yazhouwan National Laboratory, Sanya, 572025, Hainan, China.

出版信息

Nat Commun. 2025 Aug 7;16(1):7301. doi: 10.1038/s41467-025-62652-7.

DOI:10.1038/s41467-025-62652-7
PMID:40775240
Abstract

Eukaryotic ribosome biogenesis proceeds from nucleolus to cytosol assisted by various assembly factors. The process is evolutionarily conserved across eukaryotes but differences between the kingdoms are emerging. Here, we describe how the OPENER (OPNR) protein complex is required for 60S ribosome assembly in the model plant Arabidopsis thaliana. The complex is observed on both nuclear envelope and mitochondria, and contains OPNR, OPENER ASSOCIATED PROTEIN 1 (OAP1), OAP2, Cell Division Cycle 48 D (CDC48D) and Calmodulin-interacting protein 111 (CIP111). Depletion of the OPNR complex components results in reproductive lethality and cytoplasmic retention of assembly factors on 60S ribosomes. Subsequent biochemical analyses and structural modelling suggest that OPNR, OAP1 and OAP2 form a claw-like trimer which grabs the ribosome assembly factor RIBOSOMAL PROTEIN L24C (RPL24C) on the pre-60S ribosome. Our results reveal previously unrecognised subcellular complexity of ribosome biogenesis in plants, and point to mitochondria association as a feature to ensure sufficient translational capacity.

摘要

真核生物核糖体的生物合成在各种组装因子的协助下从核仁进行到细胞质。这一过程在真核生物中具有进化保守性,但不同生物界之间的差异正在显现。在这里,我们描述了模型植物拟南芥中60S核糖体组装如何需要OPENER(OPNR)蛋白复合体。该复合体在核膜和线粒体上均有观察到,并且包含OPNR、OPENER相关蛋白1(OAP1)、OAP2、细胞分裂周期48 D(CDC48D)和钙调蛋白相互作用蛋白111(CIP111)。OPNR复合体组分的缺失导致生殖致死以及组装因子在60S核糖体上的细胞质滞留。随后的生化分析和结构建模表明,OPNR、OAP1和OAP2形成一个爪状三聚体,它在60S前体核糖体上抓住核糖体组装因子核糖体蛋白L24C(RPL24C)。我们的结果揭示了植物核糖体生物合成中以前未被认识到的亚细胞复杂性,并指出线粒体关联是确保足够翻译能力的一个特征。

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Ribosome biogenesis in plants requires the nuclear envelope and mitochondria localized OPENER complex.植物中的核糖体生物合成需要定位于核膜和线粒体的OPENER复合体。
Nat Commun. 2025 Aug 7;16(1):7301. doi: 10.1038/s41467-025-62652-7.
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本文引用的文献

1
The SPATA5-SPATA5L1 ATPase complex directs replisome proteostasis to ensure genome integrity.SPATA5-SPATA5L1 ATP 酶复合物指导复制体蛋白稳态以确保基因组完整性。
Cell. 2024 Apr 25;187(9):2250-2268.e31. doi: 10.1016/j.cell.2024.03.002. Epub 2024 Mar 29.
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Mapping of cytosol-facing organelle outer membrane proximity proteome by proximity-dependent biotinylation in living Arabidopsis cells.在活的拟南芥细胞中通过邻近依赖性生物素化绘制胞质面细胞器外膜邻近蛋白质组图谱。
Plant J. 2024 Apr;118(1):7-23. doi: 10.1111/tpj.16641. Epub 2024 Jan 23.
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Improving deep learning protein monomer and complex structure prediction using DeepMSA2 with huge metagenomics data.
利用 DeepMSA2 和海量宏基因组学数据改进深度学习蛋白质单体和复合物结构预测。
Nat Methods. 2024 Feb;21(2):279-289. doi: 10.1038/s41592-023-02130-4. Epub 2024 Jan 2.
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Arabidopsis NOTCHLESS plays an important role in root and embryo development.拟南芥 NOTCHLESS 在根和胚胎发育中发挥重要作用。
Plant Signal Behav. 2023 Dec 31;18(1):2245616. doi: 10.1080/15592324.2023.2245616.
5
Computational and mitochondrial functional studies of novel compound heterozygous variants in SPATA5 gene support a causal link with epileptogenic encephalopathy.SPATA5 基因新型复合杂合变异的计算和线粒体功能研究支持其与致痫性脑病的因果关系。
Hum Genomics. 2023 Feb 27;17(1):14. doi: 10.1186/s40246-023-00463-x.
6
RSL24D1 sustains steady-state ribosome biogenesis and pluripotency translational programs in embryonic stem cells.RSL24D1 维持胚胎干细胞中核糖体生物发生和多能性翻译程序的稳态。
Nat Commun. 2023 Jan 23;14(1):356. doi: 10.1038/s41467-023-36037-7.
7
Structural dynamics of AAA + ATPase Drg1 and mechanism of benzo-diazaborine inhibition.AAA+ATP 酶 Drg1 的结构动力学与苯并二氮杂硼抑制机制。
Nat Commun. 2022 Nov 9;13(1):6765. doi: 10.1038/s41467-022-34511-2.
8
Visualizing maturation factor extraction from the nascent ribosome by the AAA-ATPase Drg1.可视化 AAA-ATP 酶 Drg1 从新生核糖体中提取成熟因子。
Nat Struct Mol Biol. 2022 Sep;29(9):942-953. doi: 10.1038/s41594-022-00832-5. Epub 2022 Sep 12.
9
FRIENDLY (FMT) is an RNA binding protein associated with cytosolic ribosomes at the mitochondrial surface.FRIENDLY(FMT)是一种与线粒体表面细胞质核糖体结合的 RNA 结合蛋白。
Plant J. 2022 Oct;112(2):309-321. doi: 10.1111/tpj.15962. Epub 2022 Sep 12.
10
Eukaryotic Ribosome Biogenesis: The 60S Subunit.真核生物核糖体生物合成:60S亚基
Acta Naturae. 2022 Apr-Jun;14(2):39-49. doi: 10.32607/actanaturae.11541.