You Tong, Bielecki Johan, Maia Filipe R N C
Laboratory of Molecular Biophysics, Institute for Cell and Molecular Biology, Uppsala University, Box 596, 75124, Uppsala, Sweden.
European XFEL, Holzkoppel 4, 22869, Schenefeld, Germany.
Sci Rep. 2025 Aug 12;15(1):29559. doi: 10.1038/s41598-025-15092-8.
Single-particle imaging (SPI) using X-ray free-electron Lasers (XFELs) offers the potential to determine protein structures at high spatial and temporal resolutions without the need for crystallization or vitrification. However, the technique faces challenges due to weak diffraction signals from single proteins and significant background scattering from gases used for sample delivery. A recent observation of a diffraction pattern from an isolated GroEL protein complex Ekeberg T et al. (Light Sci Appl 13:15, 2024. https://doi.org/10.1038/274s41377-023-01352-7 ) had similar numbers of signal and background photons. Ongoing efforts aim to reduce the background created by sample delivery, with one approach replacing most of the used gas with helium Yenupuri T et al. (Sci Rep 14:4401, 2024. https://doi.org/10.1038/s41598-024-54605-9 ). In this study, we investigate the effects of a reduced background on the resolution limits for SPI of isolated proteins under different experiment conditions. As a test case, we used GroEL, and we used experimentally derived parameters for our simulations. We observe that background significantly impacts the achievable resolution, particularly when the signal strength is comparable to the background. This is best exemplified at 6.0 keV, where a background reduction by a factor of 10 leads to a resolution improvement from 1.9 to 1.2 nm, for a dataset of [Formula: see text] patterns.
使用X射线自由电子激光(XFEL)进行单粒子成像(SPI)能够在无需结晶或玻璃化的情况下,以高空间和时间分辨率测定蛋白质结构。然而,由于单个蛋白质的衍射信号较弱以及样品输送所用气体产生的大量背景散射,该技术面临挑战。最近对分离的GroEL蛋白复合物的衍射图案的观察(Ekeberg T等人,《光科学应用》13:15,2024。https://doi.org/10.1038/274s41377-023-01352-7 )显示信号光子和背景光子数量相近。正在进行的努力旨在减少样品输送产生的背景,一种方法是用氦气替代大部分所用气体(Yenupuri T等人,《科学报告》14:4401,2024。https://doi.org/10.1038/s41598-024-54605-9 )。在本研究中,我们研究了背景降低对不同实验条件下分离蛋白质SPI分辨率极限的影响。作为测试案例,我们使用了GroEL,并在模拟中使用了实验得出的参数。我们观察到背景对可实现的分辨率有显著影响,特别是当信号强度与背景相当时。这在6.0 keV时表现得最为明显,对于一组[公式:见原文]图案的数据集,背景降低10倍会使分辨率从1.9纳米提高到1.2纳米。