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人类小脑的转录组梯度

Transcriptomic gradients of the human cerebellum.

作者信息

King Leana, King Maedbh, Zhen Zonglei, Ivry Richard B, Weiner Kevin S

机构信息

Department of Neuroscience, University of California, Berkeley, CA, United States.

Helen Wills Neuroscience Institute, University of California, Berkeley, CA, United States.

出版信息

Imaging Neurosci (Camb). 2025 Feb 26;3. doi: 10.1162/imag_a_00494. eCollection 2025.

Abstract

In the past decade, there has been major interest in understanding the role of transcriptomics in the functional and anatomical layout of the human brain. To date, almost all of the work linking transcriptomics to human brain function and structure has been restricted to the cerebral cortex. The culmination of this work has identified transcriptomics as an important shared principle that can tie together function, structure, and gene expression. However, largely missing from this work is the subcortex-namely the cerebellum. Here, we investigate whether transcriptomics offer a link between function and structure in the human cerebellum, using gene expression data from post-mortem cerebella and multi-modal brain atlases. We find that transcriptomic gradients from a sparse subset of genes align with a macroanatomical, rather than a functional - parcellation of the cerebellum, and the transition of the main gradient occurs at the horizontal fissure for the group, as well as individual cerebella. Conversely, when filtering for cortex-specific genes, there is an alignment with continuous functional gradients of the cerebellum, but not discrete parcellated areas.

摘要

在过去十年中,人们对了解转录组学在人类大脑功能和解剖结构布局中的作用产生了浓厚兴趣。迄今为止,几乎所有将转录组学与人类大脑功能和结构联系起来的工作都局限于大脑皮层。这项工作的最终成果已将转录组学确定为一个重要的共同原则,它可以将功能、结构和基因表达联系在一起。然而,这项工作中很大程度上缺失的是大脑皮层下区域——即小脑。在此,我们利用来自死后小脑的基因表达数据和多模态脑图谱,研究转录组学是否能在人类小脑中建立功能与结构之间的联系。我们发现,来自稀疏基因子集的转录组梯度与小脑的大体解剖结构而非功能分区对齐,并且主要梯度的转变在该组以及个体小脑的水平裂处发生。相反,当筛选皮层特异性基因时,会与小脑的连续功能梯度对齐,但与离散的分区区域不对齐。

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