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通过生物信息学对非生物胁迫下濒危物种中碱性亮氨酸拉链基因家族的进化特征和表达模式进行的研究。

An Investigation into the Evolutionary Characteristics and Expression Patterns of the Basic Leucine Zipper Gene Family in the Endangered Species Under Abiotic Stress Through Bioinformatics.

作者信息

Feng Yizhuo, Bakari Almas, Guan Hengfeng, Wang Jingyan, Zhang Linping, Xu Menglan, Nyoni Michael, Cao Shijiang, Zhang Zhenzhen

机构信息

College of Forestry, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Synthetic Biology Center, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

出版信息

Plants (Basel). 2025 Jul 25;14(15):2292. doi: 10.3390/plants14152292.

DOI:10.3390/plants14152292
PMID:40805641
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12348082/
Abstract

The gene family play a crucial role in plant growth, development, and stress responses, functioning as transcription factors. While this gene family has been studied in several plant species, its roles in the endangered woody plant remain largely unclear. This study comprehensively analyzed the gene family in , identifying 71 genes distributed across all 12 chromosomes. The amino acid count in these genes ranged from 74 to 839, with molecular weights varying from 8813.28 Da to 88,864.94 Da. Phylogenetic analysis categorized the genes into 12 subfamilies (A-K, S). Interspecific collinearity analysis revealed homologous genes between and . A promoter cis-acting element analysis indicated that genes contain various elements responsive to plant hormones, stress signals, and light. Additionally, expression analysis of public RNA-seq data showed that genes are distributed across multiple tissues, exhibiting distinct expression patterns specific to root bark, root xylem, stem bark, stem xylem, and leaves. We also performed qRT-PCR analysis on five representative genes (, , , , and ). The results demonstrated significant differences in the expression of genes under various abiotic stress conditions, including salt stress, heat, and drought. Notably, and exhibited robust responses under salt or heat stress conditions. This study confirmed the roles of the gene family in responding to various abiotic stresses, thereby providing insights into its functions in plant growth, development, and stress adaptation. The findings lay a foundation for future research on breeding and enhancing stress resistance in .

摘要

该基因家族作为转录因子,在植物生长、发育及胁迫响应中发挥着关键作用。尽管已在多种植物物种中对该基因家族展开研究,但其在濒危木本植物中的作用仍 largely 不清楚。本研究全面分析了[具体植物名称]中的该基因家族,鉴定出 71 个[具体基因名称]基因分布于所有 12 条染色体上。这些基因的氨基酸数量在 74 至 839 之间,分子量从 8813.28 道尔顿到 88864.94 道尔顿不等。系统发育分析将[具体基因名称]基因分为 12 个亚家族(A - K、S)。种间共线性分析揭示了[具体植物名称]与[另一植物名称]之间的同源[具体基因名称]基因。启动子顺式作用元件分析表明,[具体基因名称]基因包含多种响应植物激素、胁迫信号和光的元件。此外,对公开 RNA - seq 数据的表达分析显示,[具体基因名称]基因分布于多个组织,在根皮、根木质部、茎皮、茎木质部和叶片中呈现出特定的不同表达模式。我们还对五个代表性的[具体基因名称]基因([基因 1 名称]、[基因 2 名称]、[基因 3 名称]、[基因 4 名称]和[基因 5 名称])进行了 qRT - PCR 分析。结果表明,在包括盐胁迫、高温和干旱在内的各种非生物胁迫条件下,[具体基因名称]基因表达存在显著差异。值得注意的是,[基因 1 名称]和[基因 2 名称]在盐胁迫或高温胁迫条件下表现出强烈响应。本研究证实了[具体基因名称]基因家族在响应各种非生物胁迫中的作用,从而为深入了解其在植物生长、发育和胁迫适应中的功能提供了见解。这些发现为未来[具体植物名称]的育种和增强抗逆性研究奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21ca/12348082/e1b6212c7a0d/plants-14-02292-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21ca/12348082/d1aeb846b455/plants-14-02292-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21ca/12348082/3b2ec9081c0b/plants-14-02292-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21ca/12348082/dabec062b71f/plants-14-02292-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21ca/12348082/186b193348ce/plants-14-02292-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21ca/12348082/ef84e800c563/plants-14-02292-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21ca/12348082/065789eb8a71/plants-14-02292-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21ca/12348082/5687f533276b/plants-14-02292-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21ca/12348082/be13b861bf15/plants-14-02292-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21ca/12348082/e1b6212c7a0d/plants-14-02292-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21ca/12348082/d1aeb846b455/plants-14-02292-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21ca/12348082/3b2ec9081c0b/plants-14-02292-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21ca/12348082/dabec062b71f/plants-14-02292-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21ca/12348082/186b193348ce/plants-14-02292-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21ca/12348082/ef84e800c563/plants-14-02292-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21ca/12348082/065789eb8a71/plants-14-02292-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21ca/12348082/5687f533276b/plants-14-02292-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21ca/12348082/be13b861bf15/plants-14-02292-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21ca/12348082/e1b6212c7a0d/plants-14-02292-g009.jpg

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