Suppr超能文献

对 基因的基因组鉴定和进化分析及其对环境因素的响应

Genome Identification and Evolutionary Analysis of Genes and Response to Environmental Factors in .

机构信息

International College, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

College of Forestry, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

出版信息

Int J Mol Sci. 2023 Aug 9;24(16):12581. doi: 10.3390/ijms241612581.

Abstract

is nationally conserved in China due to its high economic value and positive effect on the ecological environment. has an excellent wood structure, making it useful for industrial and domestic applications. Despite its importance, there are only a few studies on the lateral organ boundary domain (LBD) genes in . The gene family contributes to prompting rooting in multiple plant species and therefore supports their survival directly. To understand the LBD family in , we verified its characteristics in this article. By comparing the sequences of and identifying conserved domains and motifs, we found that there were 38 members of the LBD family in , which were named to . Through evolutionary analysis, we found that they were divided into two different populations and five subfamilies in total. The gene family in (Hemsl.) Yang species had two subfamilies, including 32 genes in Class I and 6 genes in Class II. It mainly consists of a Lateral Organ Boundary (LOB) conservative domain, and the protein structure is mostly "Y"-shaped. The gene expression pattern of the gene family showed that the genes were mainly expressed in lateral organs of plants, such as flowers and fruits. The response of LBD transcription factors to red and blue light was summarized, and several models of optogenetic expression regulation were proposed. The effect of regulatory mechanisms on plant rooting was also predicted. Moreover, quantitative real-time PCR (qRT-PCR) revealed that most s were differentially expressed under cold, heat, drought, and salt stresses, indicating that s might play different functions depending on the type of abiotic stress. This study provides the foundation for further research on the function of LBD in this tree species in the future.

摘要

在中国,由于其具有很高的经济价值和对生态环境的积极影响,因此得到了广泛的保护。 具有优良的木材结构,因此可用于工业和家庭应用。尽管它很重要,但关于 的横向器官边界域 (LBD) 基因的研究很少。 基因家族有助于促进多种植物的生根,因此直接支持它们的生存。为了了解 中的 LBD 家族,我们在本文中验证了其特征。通过比较 和鉴定保守结构域和基序的序列,我们发现 中有 38 个 LBD 家族成员,它们被命名为 到 。通过进化分析,我们发现它们总共分为两个不同的种群和五个亚科。在 (Hemsl.)杨属物种中的 基因家族有两个亚科,其中包括 I 类的 32 个基因和 II 类的 6 个基因。它主要由一个横向器官边界 (LOB) 保守结构域组成,蛋白质结构主要为“Y”形。 基因家族的基因表达模式表明, 基因主要在植物的侧生器官中表达,如花和果实。总结了 LBD 转录因子对红光和蓝光的反应,并提出了几种光遗传学表达调控模型。还预测了调节机制对植物生根的影响。此外,定量实时 PCR (qRT-PCR) 显示,在冷、热、干旱和盐胁迫下,大多数 s 均有差异表达,这表明 s 可能根据非生物胁迫的类型发挥不同的功能。这项研究为未来进一步研究该树种中 LBD 的功能提供了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/039e/10454761/b3a5b72f5559/ijms-24-12581-g001.jpg

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验