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当DNA讲述故事:高分辨率熔解曲线分析作为地中海鲸类鉴定的法医工具

When DNA Tells the Tale: High-Resolution Melting as a Forensic Tool for Mediterranean Cetacean Identification.

作者信息

Norcia Mariangela, Illiano Alessia, Mussi Barbara, Di Nocera Fabio, Esposito Emanuele, Di Cosmo Anna, Fulgione Domenico, Maselli Valeria

机构信息

Department of Biology, University of Napoli Federico II, Via Cinthia 26, 80126 Napoli, Italy.

Oceanomare Delphis APS, Viale Rimembranze 14, 47924 Rimini, Italy.

出版信息

Int J Mol Sci. 2025 Aug 4;26(15):7517. doi: 10.3390/ijms26157517.

DOI:10.3390/ijms26157517
PMID:40806645
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12347690/
Abstract

Effective species identification is crucial for the conservation and management of marine mammals, particularly in regions such as the Mediterranean Sea, where several cetacean populations are endangered or vulnerable. In this study, we developed and validated a High-Resolution Melting (HRM) analysis protocol for the rapid, cost-effective, and reliable identification of the four representative marine cetacean species that occur in the Mediterranean Sea: the bottlenose dolphin (), the striped dolphin (), the sperm whale (), and the fin whale (). Species-specific primers targeting mitochondrial DNA regions (cytochrome b and D-loop) were designed to generate distinct melting profiles. The protocol was tested on both tissue and fecal samples, demonstrating high sensitivity, reproducibility, and discrimination power. The results confirmed the robustness of the method, with melting curve profiles clearly distinguishing the target species and achieving a success rate > 95% in identifying unknown samples. The use of HRM offers several advantages over traditional sequencing methods, including reduced cost, speed, portability, and suitability for degraded samples, such as those from the stranded individuals. This approach provides a valuable tool for non-invasive genetic surveys and real-time species monitoring, contributing to more effective conservation strategies for cetaceans and enforcement of regulations against illegal trade.

摘要

有效的物种鉴定对于海洋哺乳动物的保护和管理至关重要,特别是在地中海等地区,那里有几种鲸类种群处于濒危或易危状态。在本研究中,我们开发并验证了一种高分辨率熔解(HRM)分析方案,用于快速、经济高效且可靠地鉴定在地中海出现的四种代表性海洋鲸类物种:宽吻海豚()、条纹海豚()、抹香鲸()和长须鲸()。针对线粒体DNA区域(细胞色素b和D环)设计的物种特异性引物可产生不同的熔解曲线。该方案在组织和粪便样本上均进行了测试,显示出高灵敏度、可重复性和鉴别能力。结果证实了该方法的稳健性,熔解曲线轮廓能清晰区分目标物种,在鉴定未知样本时成功率超过95%。与传统测序方法相比,HRM的使用具有多个优势,包括成本降低、速度快、便携性以及适用于降解样本,如来自搁浅个体的样本。这种方法为非侵入性遗传调查和实时物种监测提供了一个有价值的工具,有助于制定更有效的鲸类保护策略并执行打击非法贸易的法规。

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本文引用的文献

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Post Mortem Findings of Cetaceans Stranded Along the Campania Coast from 2016 to 2022.2016年至2022年坎帕尼亚海岸搁浅鲸类动物的尸检结果
Animals (Basel). 2025 Jun 19;15(12):1812. doi: 10.3390/ani15121812.
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Anthropic Pressure on Cetaceans Stranded Along the Ligurian Coast Within the Pelagos Sanctuary: A Case Series.利古里亚海岸沿线位于佩拉戈斯保护区内的搁浅鲸类所面临的人为压力:病例系列
Animals (Basel). 2024 Nov 8;14(22):3207. doi: 10.3390/ani14223207.
3
Environmental DNA as a complementary tool for biodiversity monitoring: A multi-technique and multi-trophic approach to investigate cetacean distribution and feeding ecology.
环境 DNA 作为生物多样性监测的补充工具:一种多技术和多营养级方法,用于调查鲸目动物的分布和摄食生态。
PLoS One. 2024 Oct 16;19(10):e0300992. doi: 10.1371/journal.pone.0300992. eCollection 2024.
4
subsp. in Stranded Cetaceans: A 6-Year Monitoring of the Ligurian Sea in Italy.意大利利古里亚海搁浅鲸类动物的亚种:为期6年的监测
Animals (Basel). 2024 Sep 30;14(19):2825. doi: 10.3390/ani14192825.
5
Pathogen Prevalence in Cetaceans Stranded along the Italian Coastline between 2015 and 2020.2015年至2020年间意大利海岸线搁浅鲸类动物的病原体流行情况
Pathogens. 2024 Sep 4;13(9):762. doi: 10.3390/pathogens13090762.
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The answer, my friend, is blowin' in the wind: Blow sampling provides a new dimension to whale population monitoring.答案,我的朋友,就在风中飘散: blowing 采样为鲸群监测提供了新的维度。
Mol Ecol Resour. 2024 Nov;24(8):e14012. doi: 10.1111/1755-0998.14012. Epub 2024 Aug 26.
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Non-invasive age estimation based on faecal DNA using methylation-sensitive high-resolution melting for Indo-Pacific bottlenose dolphins.基于粪便 DNA 采用甲基化敏感高分辨率熔解分析的印太瓶鼻海豚无创年龄估测。
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