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用于在新生儿扩散磁共振成像中以减少采集时间准确估计纤维取向分布的等变球面卷积神经网络。

Equivariant spherical CNNs for accurate fiber orientation distribution estimation in neonatal diffusion MRI with reduced acquisition time.

作者信息

Snoussi Haykel, Karimi Davood

机构信息

Department of Radiology, Boston Children's Hospital and Harvard Medical School, Boston, MA, United States.

出版信息

Front Neurosci. 2025 Jul 30;19:1604545. doi: 10.3389/fnins.2025.1604545. eCollection 2025.

DOI:10.3389/fnins.2025.1604545
PMID:40809396
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12343732/
Abstract

Early and accurate assessment of brain microstructure using diffusion Magnetic Resonance Imaging (dMRI) is crucial for identifying neurodevelopmental disorders in neonates, but remains challenging due to low signal-to-noise ratio (SNR), motion artifacts, and ongoing myelination. In this study, we propose a rotationally equivariant Spherical Convolutional Neural Network (sCNN) framework tailored for neonatal dMRI. We predict the Fiber Orientation Distribution (FOD) from multi-shell dMRI signals acquired with a reduced set of gradient directions (30% of the full protocol), enabling faster and more cost-effective acquisitions. We train and evaluate the performance of our sCNN using real data from 43 neonatal dMRI datasets provided by the Developing Human Connectome Project (dHCP). Our results demonstrate that the sCNN significantly outperforms a Multi-Layer Perceptron (MLP) baseline across multiple quantitative metrics, including Mean Squared Error (MSE), Peak Signal-to-Noise Ratio (PSNR), Angular Correlation Coefficient (ACC), angular error, and peak match rate, indicating superior FOD estimation accuracy. More importantly, it yields FODs and tractography that are quantitatively comparable and qualitatively highly similar to those from a reliable Hybrid-CSD ground truth, despite using only 30% of the full acquisition data. These findings highlight sCNNs' potential for accurate and clinically efficient dMRI analysis, paving the way for improved diagnostic capabilities and characterization of early brain development with shorter scan times.

摘要

利用扩散磁共振成像(dMRI)对脑微结构进行早期准确评估对于识别新生儿神经发育障碍至关重要,但由于信噪比低、运动伪影和持续的髓鞘形成,这一过程仍然具有挑战性。在本研究中,我们提出了一种专门为新生儿dMRI量身定制的旋转等变球面卷积神经网络(sCNN)框架。我们从以减少的梯度方向集(完整协议的30%)采集的多壳dMRI信号中预测纤维取向分布(FOD),从而实现更快且更具成本效益的采集。我们使用来自人类连接组发育项目(dHCP)提供的43个新生儿dMRI数据集的真实数据来训练和评估我们的sCNN的性能。我们的结果表明,在包括均方误差(MSE)、峰值信噪比(PSNR)、角相关系数(ACC)、角度误差和峰值匹配率在内的多个定量指标上,sCNN显著优于多层感知器(MLP)基线,表明其具有更高的FOD估计精度。更重要的是,尽管仅使用了完整采集数据的30%,它生成的FOD和纤维束成像在定量上具有可比性,在定性上与可靠的混合约束球形去卷积(Hybrid-CSD)真值非常相似。这些发现突出了sCNN在准确且临床高效的dMRI分析方面的潜力,为在更短扫描时间内改善早期脑发育的诊断能力和特征描述铺平了道路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c564/12343732/de43bd15b34b/fnins-19-1604545-g0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c564/12343732/613b0b3cb6f4/fnins-19-1604545-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c564/12343732/c59e4332e8f2/fnins-19-1604545-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c564/12343732/7ea70984aa15/fnins-19-1604545-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c564/12343732/2797b575a95b/fnins-19-1604545-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c564/12343732/3d396cd984ec/fnins-19-1604545-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c564/12343732/de43bd15b34b/fnins-19-1604545-g0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c564/12343732/613b0b3cb6f4/fnins-19-1604545-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c564/12343732/c59e4332e8f2/fnins-19-1604545-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c564/12343732/7ea70984aa15/fnins-19-1604545-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c564/12343732/2797b575a95b/fnins-19-1604545-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c564/12343732/3d396cd984ec/fnins-19-1604545-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c564/12343732/de43bd15b34b/fnins-19-1604545-g0006.jpg

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本文引用的文献

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Advanced Framework for Fetal Diffusion MRI: Dynamic Distortion and Motion Correction.胎儿扩散磁共振成像的先进框架:动态畸变与运动校正
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通过多任务学习在扩散磁共振成像中对胎儿大脑进行详细描绘。
bioRxiv. 2024 Aug 30:2024.08.29.609697. doi: 10.1101/2024.08.29.609697.
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Deep learning microstructure estimation of developing brains from diffusion MRI: A newborn and fetal study.基于扩散磁共振成像的深度学习对发育中大脑微观结构的估计:一项新生儿和胎儿研究。
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Spherical convolutional neural networks can improve brain microstructure estimation from diffusion MRI data.球形卷积神经网络可以改善基于扩散磁共振成像数据的脑微结构估计。
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