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用于扩散磁共振成像中球形反卷积的E(3)×SO(3)等变网络

E(3) × SO(3)-Equivariant Networks for Spherical Deconvolution in Diffusion MRI.

作者信息

Elaldi Axel, Gerig Guido, Dey Neel

机构信息

VIDA Center, Computer Science and Engineering, New York University.

Computer Science and Artificial Intelligence Lab, Massachusetts Institute of Technology.

出版信息

Proc Mach Learn Res. 2024;227:301-319.

PMID:38419749
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10901527/
Abstract

We present Roto-Translation Equivariant Spherical Deconvolution (RT-ESD), an equivariant framework for sparse deconvolution of volumes where each voxel contains a spherical signal. Such 6D data naturally arises in diffusion MRI (dMRI), a medical imaging modality widely used to measure microstructure and structural connectivity. As each dMRI voxel is typically a mixture of various overlapping structures, there is a need for blind deconvolution to recover crossing anatomical structures such as white matter tracts. Existing dMRI work takes either an iterative or deep learning approach to sparse spherical deconvolution, yet it typically does not account for relationships between neighboring measurements. This work constructs equivariant deep learning layers which respect to symmetries of spatial rotations, reflections, and translations, alongside the symmetries of voxelwise spherical rotations. As a result, RT-ESD improves on previous work across several tasks including fiber recovery on the DiSCo dataset, deconvolution-derived partial volume estimation on real-world human brain dMRI, and improved downstream reconstruction of fiber tractograms on the Tractometer dataset. Our implementation is available at https://github.com/AxelElaldi/e3so3_conv.

摘要

我们提出了旋转平移等变球面反卷积(RT-ESD),这是一种用于对体数据进行稀疏反卷积的等变框架,其中每个体素都包含一个球面信号。这种6D数据自然出现在扩散磁共振成像(dMRI)中,dMRI是一种广泛用于测量微观结构和结构连通性的医学成像模态。由于每个dMRI体素通常是各种重叠结构的混合体,因此需要进行盲反卷积以恢复交叉的解剖结构,如白质束。现有的dMRI工作采用迭代或深度学习方法进行稀疏球面反卷积,但通常没有考虑相邻测量之间的关系。这项工作构建了等变深度学习层,这些层尊重空间旋转、反射和平移的对称性以及体素级球面旋转的对称性。结果,RT-ESD在多个任务上改进了先前的工作,包括在DiSCo数据集上的纤维恢复、在真实人类脑dMRI上基于反卷积的部分体积估计,以及在Tractometer数据集上改进纤维束成像的下游重建。我们的实现可在https://github.com/AxelElaldi/e3so3_conv获取。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04ec/10901527/42a98a5a630e/nihms-1923394-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04ec/10901527/efd914fd94b5/nihms-1923394-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04ec/10901527/cbad954e5737/nihms-1923394-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04ec/10901527/1c97c124be8f/nihms-1923394-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04ec/10901527/5af543b31ef1/nihms-1923394-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04ec/10901527/1dced2f84505/nihms-1923394-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04ec/10901527/42a98a5a630e/nihms-1923394-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04ec/10901527/efd914fd94b5/nihms-1923394-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04ec/10901527/cbad954e5737/nihms-1923394-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04ec/10901527/1c97c124be8f/nihms-1923394-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04ec/10901527/5af543b31ef1/nihms-1923394-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04ec/10901527/1dced2f84505/nihms-1923394-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04ec/10901527/42a98a5a630e/nihms-1923394-f0004.jpg

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VRfRNet: Volumetric ROI fODF reconstruction network for estimation of multi-tissue constrained spherical deconvolution with only single shell dMRI.
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