Liu Kai, Chen Shengli, Hu Tao, Zhang Xuan, Huang Qiang
Neurosurgery Department, Tianjin Medical University, Tianjin, China.
Neurosurgery Department, Shanxi Provincial People's Hospital, Shanxi, China.
Medicine (Baltimore). 2025 Aug 15;104(33):e43782. doi: 10.1097/MD.0000000000043782.
Despite extensive research on therapeutic targets for glioma, progress has been limited by ineffective treatments. Our aim was to analyze gasdermin (GSDM) family expression, mutations, and clinical relevance in glioma to support clinical decision-making and risk assessment. Glioma specimens were procured from The Cancer Genome Atlas for the purpose of conducting gene expression profile interaction analysis and human protein mapping using various bioinformatics tools, including gene expression profiling interactive analysis, Human Protein Atlas, Kaplan-Meier plotters, cBioPorta, LinkedOmics, database for annotation, visualization and integrated discovery, and R Software. A statistically significant difference was observed with a P < .05. The investigation of mRNA expression levels of GSDM subtypes in 11,079 glioma tissues and 6942 normal brain tissues revealed significant differences, with GSDMA, GSDMD, and GSDME being elevated in glioma compared to normal tissues, while GSDMB showed lower expression. The analysis of mRNA expression levels for GSDM subtypes across 33 tumor and normal tissues showed significant differences in GSDMA, GSDMB, GSDMD, and GSDME. The expression of these genes varied significantly in different glioma subtypes, with higher levels noted in 1p19q non-deletion gliomas and IDH1 wild-type gliomas. Additionally, glioblastoma multiforme displayed increased GSDMA, GSDMD, and GSDME levels compared to other subtypes, with significant associations between gene expression and the clinical World Health Organization stage of gliomas. GSDMB, GSDMC, GSDMD, and GSDME were identified as independent prognostic factors affecting overall survival, with notable differences in recurrence-free survival among different expression groups. Mutation analysis revealed that expansion was the most common mutation in the GSDM family (7% of patients), primarily affecting GSDMD, which had a mutation rate of 5%. Correlation analyses highlighted both positive and negative relationships among GSDM members. Furthermore, enrichment analyses in the database for annotation, visualization and integrated discovery linked 173 associated genes to biological processes like pyroptosis and autophagy, along with involvement in the phagocytic and synaptic vesicle circulation pathways, suggesting that GSDMs may play critical roles in cell death mechanisms and autophagy in glioma, which requires further exploration. Overall, our results suggest a significant involvement of the GSDM group in the pathogenesis of glioma. GSDMB, GSDMC, GSDMD, and GSDME have been identified as potential prognostic and predictive markers for glioma, while GSDMs show promise as therapeutic targets for this type of brain tumor.
尽管对胶质瘤的治疗靶点进行了广泛研究,但治疗效果不佳限制了进展。我们的目的是分析胶质瘤中gasdermin(GSDM)家族的表达、突变及临床相关性,以支持临床决策和风险评估。从癌症基因组图谱获取胶质瘤标本,使用各种生物信息学工具进行基因表达谱相互作用分析和人类蛋白质图谱绘制,这些工具包括基因表达谱交互式分析、人类蛋白质图谱、Kaplan-Meier绘图工具、cBioPorta、LinkedOmics、注释、可视化与整合发现数据库以及R软件。观察到具有统计学意义的差异,P < 0.05。对11,079例胶质瘤组织和6,942例正常脑组织中GSDM亚型的mRNA表达水平进行研究,发现存在显著差异,与正常组织相比,胶质瘤中GSDMA、GSDMD和GSDME升高,而GSDMB表达较低。对33种肿瘤和正常组织中GSDM亚型的mRNA表达水平分析显示,GSDMA、GSDMB、GSDMD和GSDME存在显著差异。这些基因在不同胶质瘤亚型中的表达差异显著,在1p19q非缺失胶质瘤和IDH1野生型胶质瘤中表达水平较高。此外,与其他亚型相比,多形性胶质母细胞瘤中GSDMA、GSDMD和GSDME水平升高,基因表达与胶质瘤的世界卫生组织临床分期之间存在显著关联。GSDMB、GSDMC、GSDMD和GSDME被确定为影响总生存期的独立预后因素,不同表达组的无复发生存期存在显著差异。突变分析显示,扩增是GSDM家族中最常见的突变(7%的患者),主要影响GSDMD,其突变率为5%。相关性分析突出了GSDM成员之间的正负关系。此外,在注释、可视化与整合发现数据库中的富集分析将173个相关基因与细胞焦亡和自噬等生物学过程联系起来,同时涉及吞噬和突触小泡循环途径,表明GSDM可能在胶质瘤的细胞死亡机制和自噬中发挥关键作用,这需要进一步探索。总体而言,我们的结果表明GSDM组在胶质瘤发病机制中具有重要作用。GSDMB、GSDMC、GSDMD和GSDME已被确定为胶质瘤的潜在预后和预测标志物,而GSDM有望成为这类脑肿瘤的治疗靶点。