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使用靶向CRISPR时代方法对新的非模式昆虫基因组进行操作。

Manipulation of a New Non-model Insect Genome Using Targeted CRISPR-Era Approaches.

作者信息

Gaul Connor R, Vijay Trisha, Johnson Rebecca, Macias Vanessa M

机构信息

Department of Biological Sciences, University of North Texas, Denton, TX, USA.

Advanced Environmental Research Institute, University of North Texas, Denton, TX, USA.

出版信息

Methods Mol Biol. 2025;2935:335-384. doi: 10.1007/978-1-0716-4583-3_15.

DOI:10.1007/978-1-0716-4583-3_15
PMID:40828286
Abstract

Site-specific genome editing is the most direct way to test gene function. When CRISPR-Cas9 was introduced for the editing of eukaryotic genomes, entomologists were ready with questions but had many methodologies to forge for the approach to be useful. Now, roughly 45 non-model insect genomes have been edited to study processes such as insecticide resistance, olfaction, immunity, and development. A useful first step for gene editing in an insect species of interest is identification and targeted editing of a gene with a visible phenotype. Visible markers increase the efficiency of detection of a genetic change; a wide availability of markers is one reason why model insects are so easy to manipulate and so have been key in understanding many biological processes. Here we will describe with detailed protocols how to approach a new insect species with CRISPR-era approaches by targeting a visual marker with Cas9-editing.

摘要

位点特异性基因组编辑是测试基因功能最直接的方法。当CRISPR-Cas9被引入用于真核生物基因组编辑时,昆虫学家虽有诸多疑问,但也有许多方法来使该方法变得有用。如今,大约45种非模式昆虫基因组已被编辑,用于研究诸如抗药性、嗅觉、免疫和发育等过程。在感兴趣的昆虫物种中进行基因编辑的一个有用的第一步是鉴定具有可见表型的基因并对其进行靶向编辑。可见标记提高了检测基因变化的效率;标记的广泛可用性是模式昆虫如此易于操作且在理解许多生物学过程中起关键作用的一个原因。在此,我们将通过详细的方案描述如何采用CRISPR时代的方法,通过用Cas9编辑靶向视觉标记来研究一种新的昆虫物种。

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本文引用的文献

1
Gene Editing in the Chagas Disease Vector by Cas9-Mediated ReMOT Control.利用 Cas9 介导的 ReMOT 控制对恰加斯病传播媒介进行基因编辑。
CRISPR J. 2024 Apr;7(2):88-99. doi: 10.1089/crispr.2023.0076. Epub 2024 Apr 1.
2
CRISPR/Cas9-mediated efficient white genome editing in the black soldier fly Hermetia illucens.CRISPR/Cas9 介导的黑水虻 Hermetia illucens 白色基因组高效编辑。
Mol Genet Genomics. 2024 Feb 5;299(1):5. doi: 10.1007/s00438-023-02088-0.
3
Deep orange gene editing triggers temperature-sensitive lethal phenotypes in Ceratitis capitata.
深橙色基因编辑在黑腹果蝇中触发温度敏感致死表型。
BMC Biotechnol. 2024 Feb 1;24(1):7. doi: 10.1186/s12896-024-00832-x.
4
Mutagenesis of Odorant Receptor Coreceptor Reveals the Odorant-Detected Behavior of the Predator .气味受体共受体的诱变揭示了捕食者所检测到的气味行为。
Int J Mol Sci. 2023 Dec 9;24(24):17284. doi: 10.3390/ijms242417284.
5
The Genome of the Yellow Mealworm, : It's Bigger Than You Think.黄粉虫基因组:比你想象的更大。
Genes (Basel). 2023 Dec 14;14(12):2209. doi: 10.3390/genes14122209.
6
Engineered Antiviral Sensor Targets Infected Mosquitoes.工程化抗病毒传感器靶向感染的蚊子。
CRISPR J. 2023 Dec;6(6):543-556. doi: 10.1089/crispr.2023.0056.
7
Colour polymorphism associated with a gene duplication in male wood tiger moths.雄透翅蛾的颜色多态性与基因重复有关。
Elife. 2023 Oct 30;12:e80116. doi: 10.7554/eLife.80116.
8
CRISPR/Cas9-mediated mutagenesis of the white gene in an ectoparasitic wasp, Habrobracon hebetor.CRISPR/Cas9 介导的外寄生蜂,麦蛾茧蜂白基因的突变。
Pest Manag Sci. 2024 Mar;80(3):1219-1227. doi: 10.1002/ps.7851. Epub 2023 Nov 10.
9
Embryonic microinjection of ribonucleoprotein complex (Cas9+sgRNA) of white gene in melon fly, Zeugodacus cucurbitae (Coquillett) (Diptera: Tephritidae) produced white eye phenotype.将核糖核蛋白复合物(Cas9+sgRNA)的胚胎显微注射到瓜实蝇(Zeugodacus cucurbitae(Coquillett))(双翅目:实蝇科)中,产生了白眼表型。
Arch Insect Biochem Physiol. 2023 Dec;114(4):e22059. doi: 10.1002/arch.22059. Epub 2023 Oct 16.
10
Next-generation CRISPR gene-drive systems using Cas12a nuclease.利用 Cas12a 核酸酶的下一代 CRISPR 基因驱动系统。
Nat Commun. 2023 Oct 12;14(1):6388. doi: 10.1038/s41467-023-42183-9.