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BorF的X射线晶体结构,BorF是一种双组分黄素依赖性色氨酸卤化酶的黄素还原酶亚基。

The X-ray crystal structure of BorF, the flavin reductase subunit of a two-component flavin-dependent tryptophan halogenase.

作者信息

Ma Zheng, Rady Emily W, de Silva Aravinda J, Bellizzi John J

机构信息

Department of Chemistry and Biochemistry, College of Natural Sciences and Mathematics, The University of Toledo, 2801 W. Bancroft St, Toledo, OH, 43606, U.S.A.

出版信息

bioRxiv. 2025 Aug 12:2025.08.09.669344. doi: 10.1101/2025.08.09.669344.

DOI:10.1101/2025.08.09.669344
PMID:40832174
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12363795/
Abstract

BorF is a short-chain flavin reductase from a desert soil bacterium that uses NADH to reduce FAD to FADH, which is used by the tryptophan-6-halogenase BorH to chlorinate tryptophan in the biosynthetic pathway of borregomycin A. The X-ray crystal structure of BorF bound to FAD was solved to 2.37 Å by molecular replacement and consists of a homodimer of single-domain protomers with a Greek key split β-barrel topology containing a domain-swapped N-terminal α-helix, as seen in other members of this family. Insertions and deletions in the region between α3 and β5 lead to a variety of different conformations of the adenosine portion of FAD bound to BorF and structurally related reductases. Comparison of the FAD-bound structures of BorF and BorH suggests that FAD must completely dissociate from BorH in order to be reduced by BorF.

摘要

BorF是一种来自沙漠土壤细菌的短链黄素还原酶,它利用NADH将FAD还原为FADH,FADH被色氨酸-6-卤化酶BorH用于在博来霉素A的生物合成途径中氯化色氨酸。通过分子置换法将与FAD结合的BorF的X射线晶体结构解析到2.37 Å,它由单结构域原体的同型二聚体组成,具有希腊钥匙型分裂β桶拓扑结构,包含一个结构域交换的N端α螺旋,这与该家族的其他成员相同。α3和β5之间区域的插入和缺失导致与BorF和结构相关还原酶结合的FAD的腺苷部分有多种不同构象。BorF和BorH的FAD结合结构比较表明,FAD必须从BorH完全解离才能被BorF还原。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/164a/12363795/40fc85e92563/nihpp-2025.08.09.669344v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/164a/12363795/1b4d00134ce1/nihpp-2025.08.09.669344v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/164a/12363795/05ef1d416854/nihpp-2025.08.09.669344v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/164a/12363795/40fc85e92563/nihpp-2025.08.09.669344v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/164a/12363795/1b4d00134ce1/nihpp-2025.08.09.669344v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/164a/12363795/05ef1d416854/nihpp-2025.08.09.669344v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/164a/12363795/40fc85e92563/nihpp-2025.08.09.669344v1-f0003.jpg

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本文引用的文献

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Crystallographic and Thermodynamic Evidence of Negative Coupling in the Flavin-Dependent Tryptophan Halogenases AbeH and BorH.黄素依赖性色氨酸卤化酶AbeH和BorH中负偶联的晶体学和热力学证据
ACS Omega. 2025 Jan 8;10(6):5849-5865. doi: 10.1021/acsomega.4c09590. eCollection 2025 Feb 18.
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Identifying and Engineering Flavin Dependent Halogenases for Selective Biocatalysis.鉴定和工程化黄素依赖型卤化酶用于选择性生物催化。
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Steady-state kinetic analysis of halogenase-supporting flavin reductases BorF and AbeF reveals different kinetic mechanisms.
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Arch Biochem Biophys. 2021 Jun 15;704:108874. doi: 10.1016/j.abb.2021.108874. Epub 2021 Apr 20.
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Structures, mechanisms and applications of flavin-dependent halogenases.黄素依赖性卤化酶的结构、作用机制及应用
Enzymes. 2020;47:327-364. doi: 10.1016/bs.enz.2020.05.009. Epub 2020 Jul 18.
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