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利用多激发拉曼光谱和计算分析对铜绿假单胞菌进行鉴定及抗菌药物耐药性分析

Identification and antimicrobial resistance profiling of Pseudomonas aeruginosa using multi-excitation Raman spectroscopy and computational analytics.

作者信息

Highmore Callum, Hanrahan Niall, Cook Yoshiki, Pritchard Ysanne, Lister Adam, Cooper Kirsty, Devitt George, Munro Alasdair P S, Faust Saul N, Mahajan Sumeet, Webb Jeremy S

机构信息

School of Biological Sciences, Faculty of Environmental and Life Sciences, University of Southampton, SO17 1BJ, Southampton, UK.

National Biofilms Innovation Centre (NBIC) and Institute for Life Sciences, University of Southampton, SO17 1BJ, Southampton, UK.

出版信息

NPJ Antimicrob Resist. 2025 Aug 25;3(1):74. doi: 10.1038/s44259-025-00141-z.

DOI:10.1038/s44259-025-00141-z
PMID:40854982
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12378394/
Abstract

Antimicrobial resistance (AMR) poses a global healthcare challenge, where overprescription of antibiotics contributes to its prevalence. We have developed a rapid multi-excitation Raman spectroscopy methodology (MX-Raman) that outperforms conventional Raman spectroscopy and enhances specificity. A support vector machine (SVM) model was used to identify 20 clinical isolates of Pseudomonas aeruginosa with an accuracy of 93% using MX-Raman. Antibiotic sensitivity profiles for tobramycin, ceftazidime, ciprofloxacin, and imipenem were generated for the bacterial strains and compared with their Raman spectral signatures using MX-Raman. The 20 clinical strains were distinguished according to AMR profiles. Nine models were assessed for AMR classification performance, and SVM performed best, classifying AMR profiles of each strain with 91-96% accuracy. These data provide the basis for a new rapid clinical diagnostic platform that could screen for bacterial infection and recommend effective antibiotic treatment ahead of confirmation by conventional techniques, improving clinical outcomes and reducing the spread of AMR.

摘要

抗菌药物耐药性(AMR)对全球医疗保健构成挑战,抗生素的过度处方是其普遍存在的原因之一。我们开发了一种快速多激发拉曼光谱方法(MX-拉曼),该方法优于传统拉曼光谱并提高了特异性。使用支持向量机(SVM)模型,通过MX-拉曼识别20株铜绿假单胞菌临床分离株,准确率达93%。利用MX-拉曼为这些细菌菌株生成了妥布霉素、头孢他啶、环丙沙星和亚胺培南的抗生素敏感性谱,并将其与拉曼光谱特征进行比较。根据AMR谱对这20株临床菌株进行了区分。评估了9种模型的AMR分类性能,其中SVM表现最佳,对每种菌株AMR谱的分类准确率为91%-96%。这些数据为一个新的快速临床诊断平台奠定了基础,该平台可在通过传统技术确认之前筛查细菌感染并推荐有效的抗生素治疗,改善临床结果并减少AMR的传播。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/30e5/12378394/88d36ea29a34/44259_2025_141_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/30e5/12378394/6f1528005eb2/44259_2025_141_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/30e5/12378394/662e61c8939e/44259_2025_141_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/30e5/12378394/88d36ea29a34/44259_2025_141_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/30e5/12378394/6f1528005eb2/44259_2025_141_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/30e5/12378394/662e61c8939e/44259_2025_141_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/30e5/12378394/88d36ea29a34/44259_2025_141_Fig3_HTML.jpg

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本文引用的文献

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Anal Chem. 2024 May 28;96(21):8492-8500. doi: 10.1021/acs.analchem.4c00383. Epub 2024 May 15.
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Recent advances of Raman spectroscopy for the analysis of bacteria.用于细菌分析的拉曼光谱学的最新进展。
Anal Sci Adv. 2023 Mar 27;4(3-4):81-95. doi: 10.1002/ansa.202200066. eCollection 2023 May.
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Raman spectrum combined with deep learning for precise recognition of Carbapenem-resistant Enterobacteriaceae.
拉曼光谱结合深度学习技术实现碳青霉烯类耐药肠杆菌科的精确识别。
Anal Bioanal Chem. 2024 Apr;416(10):2465-2478. doi: 10.1007/s00216-024-05209-9. Epub 2024 Feb 21.
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Raman-Based Antimicrobial Susceptibility Testing on Antibiotics of Last Resort.基于拉曼光谱的最后手段抗生素药敏试验
Infect Drug Resist. 2023 Aug 21;16:5485-5500. doi: 10.2147/IDR.S404732. eCollection 2023.
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Antimicrobial Resistance Studies Using Raman Spectroscopy on Clinically Relevant Bacterial Strains.使用拉曼光谱技术对临床相关细菌菌株进行的抗微生物耐药性研究。
Anal Chem. 2023 Aug 1;95(30):11342-11351. doi: 10.1021/acs.analchem.3c01453. Epub 2023 Jul 18.
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High-throughput, highly sensitive and rapid SERS detection of Escherichia coli O157:H7 using aptamer-modified Au@macroporous silica magnetic photonic microsphere array.基于适配体修饰的 Au@大孔硅基磁光光子微球阵列的高通量、高灵敏、快速表面增强拉曼散射检测大肠杆菌 O157:H7。
Food Chem. 2023 Oct 30;424:136433. doi: 10.1016/j.foodchem.2023.136433. Epub 2023 May 23.
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Ceftazidime resistance in Pseudomonas aeruginosa is multigenic and complex.铜绿假单胞菌对头孢他啶的耐药性是多基因的且复杂的。
PLoS One. 2023 May 16;18(5):e0285856. doi: 10.1371/journal.pone.0285856. eCollection 2023.
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Clinical Diagnostics of Bacterial Infections and Their Resistance to Antibiotics-Current State and Whole Genome Sequencing Implementation Perspectives.细菌感染的临床诊断及其对抗生素的耐药性——现状与全基因组测序实施前景
Antibiotics (Basel). 2023 Apr 19;12(4):781. doi: 10.3390/antibiotics12040781.
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Recent advances in surface enhanced Raman spectroscopy for bacterial pathogen identifications.表面增强拉曼光谱技术在细菌病原体鉴定中的最新进展。
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