Qin Yingying, Zhao Yiru, Li Xiaoyu, Wang Ruifu, Chang Shuo, Zhang Yu, Ren Xuemei, Li Hongying
College of Life Sciences, Shanxi Agricultural University, Jinzhong 030800, China.
Houji Laboratory in Shanxi Province, Taiyuan 030031, China.
Genes (Basel). 2025 Aug 4;16(8):932. doi: 10.3390/genes16080932.
: Late embryogenesis abundant (LEA) proteins regulate stress responses and contribute significantly to plant stress tolerance. As a model species for stress resistance studies, foxtail millet () lacks comprehensive characterization of its gene family. This study aimed to comprehensively identify genes in foxtail millet and elucidate their functional roles and tissue-specific expression patterns. : Genome-wide identification of genes was conducted, followed by phylogenetic reconstruction, -acting element analysis of promoters, synteny analysis, and expression profiling. : Ninety-four genes were identified and classified into nine structurally distinct subfamilies, which are unevenly distributed across all nine chromosomes. Phylogenetic analysis showed closer clustering of genes with sorghum and rice orthologs than with genes. Synteny analysis indicated the gene family expansion through tandem and segmental duplication. Promoter -element analysis linked genes to plant growth regulation, stress responses, and hormone signaling. Transcriptome analysis revealed tissue-specific expression patterns among members, while RT-qPCR verified ABA-induced transcriptional regulation of genes. : This study identified 94 genes grouped into nine subfamilies with distinct spatial expression profiles. ABA treatment notably upregulated , , and in both shoots and roots.
晚期胚胎发生丰富(LEA)蛋白调节应激反应,并对植物的胁迫耐受性有显著贡献。作为抗逆性研究的模式物种,谷子(Setaria italica)缺乏对其LEA基因家族的全面表征。本研究旨在全面鉴定谷子中的LEA基因,并阐明其功能作用和组织特异性表达模式。:对LEA基因进行全基因组鉴定,随后进行系统发育重建、启动子顺式作用元件分析、共线性分析和表达谱分析。:鉴定出94个LEA基因,并将其分为9个结构不同的亚家族,这些亚家族在所有9条染色体上分布不均。系统发育分析表明,与高粱和水稻直系同源基因相比,谷子的LEA基因聚类更紧密。共线性分析表明,LEA基因家族通过串联重复和片段重复进行扩张。启动子元件分析将LEA基因与植物生长调节、应激反应和激素信号传导联系起来。转录组分析揭示了LEA成员之间的组织特异性表达模式,而RT-qPCR验证了ABA诱导的LEA基因转录调控。:本研究鉴定出94个LEA基因,分为9个亚家族,具有不同的空间表达谱。ABA处理显著上调了地上部和根部的SiLEA3、SiLEA4和SiLEA5。