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利用氘磁共振波谱探究细胞内酵母代谢

Probing Intracellular Yeast Metabolism With Deuterium Magnetic Resonance Spectroscopy.

作者信息

Anum Fatima, Assaf Charbel, Haj Mohamad Farhad, Anikeeva Maria, Brahms Arne, Dey Jyotirmoy, Kaltenberger Simon, Beitz Eric, Welz Lina, Annis Victoria, van Gemmeren Manuel, Duckett Simon, Hövener Jan-Bernd, Pravdivtsev Andrey N

机构信息

Section Biomedical Imaging, Molecular Imaging North Competence Center, Department of Radiology and Neuroradiology, University Hospital Schleswig-Holstein, Kiel University, Kiel, Germany.

Otto Diels Institute of Organic Chemistry, Kiel University, Kiel, Germany.

出版信息

NMR Biomed. 2025 Oct;38(10):e70121. doi: 10.1002/nbm.70121.

Abstract

Metabolomics provides snapshots of states of metabolites under specific conditions, with nuclear magnetic resonance (NMR) being one of the few noninvasive techniques. However, when applied to intact cells (e.g., yeast or mammalian cells) or tissues, traditional H NMR often suffers from overlapping signals from numerous metabolites and intracellular macromolecules such as proteins. To address this, we employed deuterium-labeled tracers that do not suffer from background interference and streamline targeted flux analysis. Deuterium magnetic resonance spectroscopy (DMRS) enables rapid, noninvasive measurement of metabolic flux without specialized equipment. In our study, we first measured T, T, and chemical shifts for 26 deuterium-labeled compounds in phosphate-buffered saline: parameters functional for optimal DMRS settings. Among the 26 deuterated compounds tested with food-grade baker's yeast (Saccharomyces cerevisiae) as an easily accessible model solution, we observed and tracked the real-time consumption of pyruvate, glucose, fumarate, acetone, and nicotinamide. We redirected yeast metabolism by (i) varying concentrations of added pyruvate and (ii) osmotic pressure by changing buffer density. This study underscores DMRS's potential as a robust, versatile tool for dissecting metabolic transformations exemplified here with the convenient yeast cell systems active for hundreds of minutes under typical NMR observation conditions.

摘要

代谢组学提供了特定条件下代谢物状态的快照,核磁共振(NMR)是少数几种非侵入性技术之一。然而,当应用于完整细胞(如酵母或哺乳动物细胞)或组织时,传统的氢核磁共振常常受到众多代谢物和细胞内大分子(如蛋白质)重叠信号的困扰。为了解决这个问题,我们采用了不受背景干扰的氘标记示踪剂,并简化了靶向通量分析。氘磁共振波谱(DMRS)无需专门设备就能快速、非侵入性地测量代谢通量。在我们的研究中,我们首先测量了磷酸盐缓冲盐水中26种氘标记化合物的T1、T2和化学位移:这些参数对优化DMRS设置很有用。在用食品级面包酵母(酿酒酵母)作为易于获取的模型溶液测试的26种氘代化合物中,我们观察并跟踪了丙酮酸、葡萄糖、富马酸、丙酮和烟酰胺的实时消耗情况。我们通过(i)改变添加丙酮酸的浓度和(ii)通过改变缓冲液密度来改变渗透压,从而改变酵母的代谢。这项研究强调了DMRS作为一种强大、通用工具的潜力,可用于剖析代谢转化,在这里以方便的酵母细胞系统为例,该系统在典型的核磁共振观察条件下能活跃数百分钟。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c850/12403501/c2685213e8f3/NBM-38-e70121-g003.jpg

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