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蓝细菌和其他细菌生物合成基因簇的多底盘表达

Multichassis Expression of Cyanobacterial and Other Bacterial Biosynthetic Gene Clusters.

作者信息

Dhakal Dipesh, Eckhardt Campbell W, Jiang Yujia, Luesch Hendrik, Ding Yousong

机构信息

Department of Medicinal Chemistry, Center for Natural Products, Drug Discovery and Development (CNPD3), University of Florida, Gainesville, Florida 32610, United States.

Program in Cancer and Stem Cell Biology, Duke-NUS Medical School, Singapore 169857, Singapore.

出版信息

ACS Synth Biol. 2025 Sep 2. doi: 10.1021/acssynbio.5c00390.

DOI:10.1021/acssynbio.5c00390
PMID:40891916
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12416320/
Abstract

Heterologous expression of biosynthetic gene clusters (BGCs) is a powerful strategy for natural product (NP) discovery, yet achieving consistent expression across microbial hosts remains challenging. Here, we developed cross-phyla vector systems enabling the expression of BGCs from cyanobacteria and other bacterial origins in Gram-negative , Gram-positive , and two model cyanobacterial strains including unicellular PCC 6803 and filamentous sp. PCC 7120. Following validation using constitutive and inducible expression of the enhanced yellow fluorescent protein (eYFP), we applied these vectors to express the shinorine and violacein BGCs in all four hosts. Promoter tuning, substrate feeding, BGC refactoring, and inducible control enhanced NP production and mitigated host toxicity. Notably, we demonstrated that can serve as a chassis for cyanobacterial NP BGC expression. Our results provide versatile expression platforms for probing BGC function and accelerating natural product discovery from diverse cyanobacterial and other bacterial lineages.

摘要

生物合成基因簇(BGCs)的异源表达是天然产物(NP)发现的一种强大策略,但在不同微生物宿主中实现一致表达仍然具有挑战性。在此,我们开发了跨门载体系统,能够在革兰氏阴性菌、革兰氏阳性菌以及两种模式蓝藻菌株(包括单细胞的集胞藻PCC 6803和丝状的聚球藻属sp. PCC 7120)中表达来自蓝藻和其他细菌来源的BGCs。在使用增强型黄色荧光蛋白(eYFP)的组成型和诱导型表达进行验证后,我们应用这些载体在所有四种宿主中表达肌醇六磷酸和紫菌素BGCs。启动子调控、底物供应、BGC重构和诱导控制提高了NP产量并减轻了宿主毒性。值得注意的是,我们证明了[此处原文缺失相关内容]可作为蓝藻NP BGC表达的底盘。我们的结果为探究BGC功能和加速从不同蓝藻和其他细菌谱系中发现天然产物提供了通用的表达平台。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9fdd/12416320/80c5f68e3f3f/nihms-2108257-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9fdd/12416320/c5d9e9abaa7b/nihms-2108257-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9fdd/12416320/fe856223661d/nihms-2108257-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9fdd/12416320/809d3478bdb8/nihms-2108257-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9fdd/12416320/80c5f68e3f3f/nihms-2108257-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9fdd/12416320/c5d9e9abaa7b/nihms-2108257-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9fdd/12416320/fe856223661d/nihms-2108257-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9fdd/12416320/809d3478bdb8/nihms-2108257-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9fdd/12416320/80c5f68e3f3f/nihms-2108257-f0005.jpg

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本文引用的文献

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Green genes from blue greens: challenges and solutions to unlocking the potential of cyanobacteria in drug discovery.来自蓝细菌的绿色基因:挖掘蓝藻细菌在药物研发中潜力的挑战与解决方案
Nat Prod Rep. 2025 Jul 15. doi: 10.1039/d5np00016e.
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Synthetic biology strategies for cyanobacterial systems to heterologously produce cyanobacterial natural products.用于蓝藻系统异源生产蓝藻天然产物的合成生物学策略。
Nat Prod Rep. 2025 Apr 16. doi: 10.1039/d5np00009b.
3
A cross-species inducible system for enhanced protein expression and multiplexed metabolic pathway fine-tuning in bacteria.
一种用于增强细菌中蛋白质表达和多重代谢途径微调的跨物种诱导系统。
Nucleic Acids Res. 2025 Jan 11;53(2). doi: 10.1093/nar/gkae1315.
4
Chemical diversity of cyanobacterial natural products.蓝藻天然产物的化学多样性。
Nat Prod Rep. 2025 Jan 22;42(1):6-49. doi: 10.1039/d4np00040d.
5
The secondary metabolism collaboratory: a database and web discussion portal for secondary metabolite biosynthetic gene clusters.次生代谢合作平台:一个关于次生代谢产物生物合成基因簇的数据库及网络讨论门户。
Nucleic Acids Res. 2025 Jan 6;53(D1):D717-D723. doi: 10.1093/nar/gkae1060.
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Survival of an Antarctic cyanobacterial mat under Martian conditions.南极蓝藻席在火星条件下的存活情况。
Front Microbiol. 2024 Apr 5;15:1350457. doi: 10.3389/fmicb.2024.1350457. eCollection 2024.
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Harnessing the potential: advances in cyanobacterial natural product research and biotechnology.利用潜力:蓝细菌天然产物研究和生物技术的进展。
Nat Prod Rep. 2024 Mar 20;41(3):347-369. doi: 10.1039/d3np00045a.
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