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基于泛素相关基因鉴定生物标志物以预测肺腺癌的免疫特征和药物敏感性

Identification of biomarkers based on ubiquitin-correlated genes for predicting immune profile and drug sensitivity in lung adenocarcinoma.

作者信息

Li Yue, Tian Wei, Chen Chen, Liu Hailin, Zhang Zhenfa, Wang Changli

机构信息

Department of Lung Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin Lung Cancer Center, National Clinical Research Center for Cancer, Tianjin Medical University Cancer Institute and Hospital, Tianjin, China.

Department of General Surgery, The Second Affiliated Hospital of Tianjin University of Traditional Chinese Medicine, Tianjin, China.

出版信息

Front Pharmacol. 2025 Aug 15;16:1646396. doi: 10.3389/fphar.2025.1646396. eCollection 2025.

Abstract

BACKGROUND

Lung adenocarcinoma (LUAD) shows high recurrence rate and poor prognosis. Genes associated with ubiquitin play a role in the onset and advancement of cancers; however, they have yet to be employed for the diagnosis and prognosis of LUAD.

METHODS

First, gene modules correlated with ubiquitin were identified by WGCNA. The expression profiles obtained were intersected with differential genes taken between the LUAD and control samples. The genes were then further compressed using univariate and multifactorial Cox regression analyses and risk models. In addition, the model was validated by constructing a nomogram using clinical characteristics and Riskscore. Next, the differences in immune infiltration between different subgroups were explored, and immunotherapy and drug sensitivity evaluations were performed. The biological role of in LUAD was also explored using CCK-8, wound healing assay and transwell.

RESULTS

The intersection between the module genes between LUAD samples and control samples and differentially expressed genes (DEGs) yielded 197 intersected genes after we screened three particular modules with the strongest ubiquitin association by WGCNA. 32 genes associated with LUAD prognosis were screened, and , , , , , , , and were selected as independent prognosis genes for risk modeling. Patients were classified into low- and high-risk groups by the Riskscore. Low-risk patients had markedly better overall survival (OS) than those in the high-risk group. The quantity of immune cell infiltration between the two patient groups varied notably, and the expression of model genes was negatively connected with the infiltration of the great majority of immune cells. The medications TAE684, Cisplatin, and Midostaurin exhibited the largest negative correlation with Riskscore, according to drug sensitivity study. Lastly, we demonstrated through tests that knockdown markedly reduced LUAD cell survival, migration, and invasion.

CONCLUSION

This study is the first to systematically integrate the ubiquitin pathway with multi-omics data, constructing a robust risk model for LUAD prognosis and immune characteristics, providing a theoretical reference for future exploration of potential biomarkers for LUAD patients' diagnosis.

摘要

背景

肺腺癌(LUAD)显示出高复发率和不良预后。与泛素相关的基因在癌症的发生和发展中起作用;然而,它们尚未用于LUAD的诊断和预后。

方法

首先,通过WGCNA鉴定与泛素相关的基因模块。将获得的表达谱与LUAD和对照样本之间的差异基因进行交叉分析。然后使用单变量和多因素Cox回归分析及风险模型对基因进行进一步压缩。此外,通过使用临床特征和Riskscore构建列线图来验证该模型。接下来,探索不同亚组之间免疫浸润的差异,并进行免疫治疗和药物敏感性评估。还使用CCK-8、伤口愈合试验和transwell探索了 在LUAD中的生物学作用。

结果

通过WGCNA筛选出三个与泛素关联最强的特定模块后,LUAD样本和对照样本之间的模块基因与差异表达基因(DEG)的交叉分析产生了197个交叉基因。筛选出32个与LUAD预后相关的基因,并选择 、 、 、 及 作为风险建模的独立预后基因。根据Riskscore将患者分为低风险和高风险组。低风险患者的总生存期(OS)明显优于高风险组患者。两组患者之间免疫细胞浸润的数量差异显著,模型基因的表达与绝大多数免疫细胞的浸润呈负相关。根据药物敏感性研究,药物TAE684、顺铂和米哚妥林与Riskscore的负相关性最大。最后,我们通过 试验证明, 基因敲低显著降低了LUAD细胞的存活、迁移和侵袭能力。

结论

本研究首次系统地将泛素途径与多组学数据整合,构建了一个强大的LUAD预后和免疫特征风险模型,为未来探索LUAD患者诊断的潜在生物标志物提供了理论参考。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/841d/12394886/b4fa9ed9cc39/fphar-16-1646396-g001.jpg

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