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Deep learning-based semantic segmentation for rice yield estimation by analyzing the dynamic change of panicle coverage.

作者信息

Bak Hyeok-Jin, Kim Eun-Ji, Lee Ji-Hyeon, Chang Sungyul, Kwon Dongwon, Im Woo-Jin, Hwang Woon-Ha, Chang Jae-Ki, Chung Nam-Jin, Sang Wan-Gyu

机构信息

National Institute of Crop and Food Science, Rural Development Administration, Wanju-gun, Republic of Korea.

National Institute of Horticultural and Herbal Science, Rural Development Administration, Muan-gun, Republic of Korea.

出版信息

Front Plant Sci. 2025 Aug 14;16:1611653. doi: 10.3389/fpls.2025.1611653. eCollection 2025.


DOI:10.3389/fpls.2025.1611653
PMID:40894489
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12390994/
Abstract

INTRODUCTION: Rising global populations and climate change necessitate increased agricultural productivity. Most studies on rice panicle detection using imaging technologies rely on single-time-point analyses, failing to capture the dynamic changes in panicle coverage and their effects on yield. Therefore, this study presents a novel temporal framework for rice phenotyping and yield prediction by integrating high-resolution RGB imagery with deep learning-based semantic segmentation. METHODS: High-resolution RGB images of rice canopies were acquired over two growing seasons. We evaluated five semantic segmentation models (DeepLabv3+, U-Net, PSPNet, FPN, LinkNet) to effectively delineate rice panicles. Time-series panicle coverage data, extracted from the segmented images, were fitted to a piecewise function to model their growth and decline dynamics. This process distilled key predictive parameters: (maximum panicle coverage), (growth rate), (time of maximum growth rate), a (decline rate), and (transition point). These parameters served as predictors in four machine learning regression models (PLSR, RFR, GBR, and XGBR) to estimate yield and its components. RESULTS: In panicle segmentation, DeepLabv3+ and LinkNet achieved superior performance (mIoU > 0.81). Among the piecewise function parameters, K showed the strongest positive correlation with Yield and Grain Number (GN) ( = 0.87 and = 0.85, respectively), while was strongly negatively correlated with the Filled Grain Ratio (FGR) ( = -0.71). For yield prediction, the RFR and XGBR models demonstrated the highest performance (R= 0.89). SHAP analysis quantified the relative importance of each parameter for predicting yield components. DISCUSSION: This framework proves to be a powerful tool for quantifying rice developmental dynamics and accurately predicting yield using readily available RGB imagery. It holds significant potential for advancing both precision agriculture and crop breeding efforts.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8510/12390994/0dd537c7c657/fpls-16-1611653-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8510/12390994/3b6c9ce0a0fc/fpls-16-1611653-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8510/12390994/d20cb2f09333/fpls-16-1611653-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8510/12390994/11d8f7df967f/fpls-16-1611653-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8510/12390994/2051c69ca68d/fpls-16-1611653-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8510/12390994/0dd537c7c657/fpls-16-1611653-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8510/12390994/3b6c9ce0a0fc/fpls-16-1611653-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8510/12390994/d20cb2f09333/fpls-16-1611653-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8510/12390994/11d8f7df967f/fpls-16-1611653-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8510/12390994/2051c69ca68d/fpls-16-1611653-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8510/12390994/0dd537c7c657/fpls-16-1611653-g005.jpg

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本文引用的文献

[1]
Phenotyping of Panicle Number and Shape in Rice Breeding Materials Based on Unmanned Aerial Vehicle Imagery.

Plant Phenomics. 2024-10-24

[2]
High-Throughput Phenotyping: A Platform to Accelerate Crop Improvement.

Phenomics. 2021-5-11

[3]
Field rice panicle detection and counting based on deep learning.

Front Plant Sci. 2022-8-12

[4]
Winter wheat yield prediction using convolutional neural networks from environmental and phenological data.

Sci Rep. 2022-2-25

[5]
Text Data Augmentation for Deep Learning.

J Big Data. 2021

[6]
Review of deep learning: concepts, CNN architectures, challenges, applications, future directions.

J Big Data. 2021

[7]
Plant diseases and pests detection based on deep learning: a review.

Plant Methods. 2021-2-24

[8]
DeepLab: Semantic Image Segmentation with Deep Convolutional Nets, Atrous Convolution, and Fully Connected CRFs.

IEEE Trans Pattern Anal Mach Intell. 2017-4-27

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