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从一种海洋硅藻中分离出的慢生根瘤菌能在一种陆生豆科植物中诱导形成固氮根瘤。

A Bradyrhizobium isolate from a marine diatom induces nitrogen-fixing nodules in a terrestrial legume.

作者信息

Chandola Udita, Manirakiza Eric, Maillard Margaux, Lavier Aydat Louis Josselin, Camuel Alicia, Trottier Camille, Tanaka Atsuko, Chaumier Timothée, Giraud Eric, Tirichine Leïla

机构信息

Nantes Université, CNRS, US2B, UMR 6286, Nantes, France.

PHIM Plant Health Institute of Montpellier, Université de Montpellier, IRD, CIRAD, INRAE, Institut Agro, Montpellier, France.

出版信息

Nat Microbiol. 2025 Sep 5. doi: 10.1038/s41564-025-02105-5.

Abstract

Biological nitrogen fixation converts atmospheric nitrogen into ammonia, essential to the global nitrogen cycle. While cyanobacterial diazotrophs are well characterized, recent studies have revealed a broad distribution of non-cyanobacterial diazotrophs (NCDs) in marine environments, although their study is limited by poor cultivability. Here we report a previously uncharacterized Bradyrhizobium isolated from the marine diatom Phaeodactylum tricornutum. Phylogenomic analysis places the strain within photosynthetic Bradyrhizobium, suggesting evolutionary adaptations to marine and terrestrial niches. Average nucleotide identity supports its classification as a previously undescribed species. Remarkably, inoculation experiments showed that the isolate induced nitrogen-fixing nodules in the Aeschynomene indica legume, pointing to symbiotic capabilities across ecological boundaries. Pangenome analysis and metabolic predictions indicate that this isolate shares more features with terrestrial photosynthetic Bradyrhizobium than with marine NCDs. Overall, these findings suggest that symbiotic interactions could evolve across different ecological niches, and raise questions about the evolution of nitrogen fixation and microbe-host interactions.

摘要

生物固氮将大气中的氮转化为氨,这对全球氮循环至关重要。虽然蓝藻固氮菌已得到充分表征,但最近的研究表明,非蓝藻固氮菌(NCDs)在海洋环境中广泛分布,不过对它们的研究因可培养性差而受到限制。在此,我们报告了一种从海洋硅藻三角褐指藻中分离出的此前未被表征的慢生根瘤菌。系统基因组分析将该菌株置于光合慢生根瘤菌属内,表明其对海洋和陆地生态位具有进化适应性。平均核苷酸同一性支持将其分类为一个此前未描述的物种。值得注意的是,接种实验表明,该分离株能在合萌属豆科植物中诱导形成固氮根瘤,这表明其具有跨越生态边界的共生能力。泛基因组分析和代谢预测表明,该分离株与陆地光合慢生根瘤菌的共同特征比与海洋非蓝藻固氮菌更多。总体而言,这些发现表明共生相互作用可能在不同生态位间进化,并引发了关于固氮作用以及微生物与宿主相互作用进化的问题。

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