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用于筛选在猪细胞中与GATA4共同调控OCT4的转录因子的CRISPR/dCas9激活文库的构建。

Establishment of a CRISPR/dCas9 Activation Library for Screening Transcription Factors Co-Regulating OCT4 with GATA4 in Pig Cells.

作者信息

Yao Xiaoxia, Feng Mingjie, Sun Chengbo, Yang Sijia, Yuan Zhongyu, Liu Xueqing, Li Qinjian, Jiang Chaoqian, Weng Xiaogang, Song Jun, Mu Yanshuang

机构信息

Key Laboratory of Animal Cellular and Genetic Engineering of Heilongjiang Province, Northeast Agricultural University, Harbin 150038, China.

College of Life Science, Northeast Agricultural University, Harbin 150038, China.

出版信息

Cells. 2025 Aug 28;14(17):1330. doi: 10.3390/cells14171330.

Abstract

is a critical transcription factor for early embryonic development and pluripotency. Previous studies have shown that the regulation of by the transcription factor is species-specific in pigs. This study aimed to further investigate whether there are other transcription factors that co-regulate the transcription of with in pigs. A CRISPR activation (CRISPRa) sgRNA library was designed and constructed, containing 5056 sgRNAs targeting the promoter region of 1264 transcription factors in pigs. Then, a pig PK15 cell line was engineered with a single-copy promoter-driven EGFP reporter at the ROSA26 locus, combined with the dCas9-SAM system for transcriptional activation. The CRISPRa sgRNA lentiviral library was used to screen for transcription factors, with or without overexpression. Flow cytometry combined with high-throughput sequencing identified , , and as activators and and as repressors of . In the presence of , transcription factors such as and showed synergistic activation. Functional validation confirmed that upregulates , while inhibits it. and synergistically enhance expression. These findings provide new insights into combinatorial mechanisms that control the transcriptional regulation of in pigs.

摘要

是早期胚胎发育和多能性的关键转录因子。先前的研究表明,转录因子对的调控在猪中具有物种特异性。本研究旨在进一步探究在猪中是否存在其他与共同调控转录的转录因子。设计并构建了一个CRISPR激活(CRISPRa)sgRNA文库,其中包含靶向猪1264个转录因子启动子区域的5056个sgRNA。然后,在ROSA26位点构建了一个单拷贝启动子驱动EGFP报告基因的猪PK15细胞系,并结合dCas9-SAM系统进行转录激活。利用CRISPRa sgRNA慢病毒文库筛选转录因子,无论是否过表达。流式细胞术结合高通量测序确定、和为的激活因子,和为的抑制因子。在存在的情况下,和等转录因子表现出协同激活作用。功能验证证实上调,而抑制它。和协同增强表达。这些发现为控制猪中转录调控的组合机制提供了新的见解。

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