Tourani Elyar, Edwards Brian J, Khomami Bamin
Materials Research and Innovation Laboratory, Department of Chemical and Biomolecular Engineering, University of Tennessee, Knoxville, TN 37996, USA.
Polymers (Basel). 2025 Sep 3;17(17):2399. doi: 10.3390/polym17172399.
Molecular dynamics (MD) simulations provide atomistic insights into nucleation and crystallization in polymers, yet interpreting their complex spatiotemporal data remains a challenge. Existing order parameters face limitations, such as failing to account for directional alignment or lacking sufficient spatial resolution, preventing them from accurately capturing the anisotropic and heterogeneous characteristics of nucleation or the surface phenomena of polymer crystallization. We introduce a novel set of local order parameters-namely, - that extend scalar entropy-based descriptors by capturing first-order angular moments of the local entropy field around each particle. We compare these against conventional metrics (entropy, the crystallinity index, and smooth overlap of atomic positions (SOAP) descriptors) in equilibrium MD simulations of polymer crystallization. We show that (i) scalar entropy bands demonstrate advantages compared to SOAP in polymer phase separation at single-snapshot resolution and (ii) directional extensions (dipole projections and gradient estimates) robustly highlight the evolving crystal-melt interface, enabling earlier nucleation detection and quantitative surface profiling. UMAP embeddings of these 24-30D feature vectors reveal a continuous melt-surface-core manifold, as confirmed by supervised boundary classification. Our approach is efficient and directly interpretable, offering a practical framework for studying polymer crystallization kinetics and surface growth phenomena.
分子动力学(MD)模拟为聚合物的成核和结晶提供了原子层面的见解,但解读其复杂的时空数据仍然是一项挑战。现有的序参量存在局限性,比如无法考虑方向排列或缺乏足够的空间分辨率,这使得它们难以准确捕捉成核的各向异性和非均质性特征或聚合物结晶的表面现象。我们引入了一组全新的局部序参量,即通过捕捉每个粒子周围局部熵场的一阶角矩来扩展基于标量熵的描述符。在聚合物结晶的平衡MD模拟中,我们将这些序参量与传统指标(熵、结晶度指数和原子位置平滑重叠(SOAP)描述符)进行了比较。我们发现:(i)在单帧分辨率下的聚合物相分离中,标量熵带相较于SOAP展现出优势;(ii)方向扩展(偶极投影和梯度估计)有力地突出了不断演变的晶体-熔体界面,能够实现更早的成核检测和定量表面分析。这些24 - 30维特征向量的UMAP嵌入揭示了一个连续的熔体-表面-核心流形,这一点通过监督边界分类得到了证实。我们的方法高效且可直接解读,为研究聚合物结晶动力学和表面生长现象提供了一个实用框架。