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家禽科学中的基因组学和后基因组学进展:当前成就与未来方向。

Advances in Genomics and Postgenomics in Poultry Science: Current Achievements and Future Directions.

作者信息

Gilyazova Irina, Korytina Gulnaz, Kochetova Olga, Savelieva Olga, Mikhaylova Elena, Vershinina Zilya, Chumakova Anna, Markelov Vitaliy, Abdeeva Gulshat, Karunas Alexandra, Khusnutdinova Elza, Gusev Oleg

机构信息

Institute of Biochemistry and Genetics-Subdivision of the Ufa Federal Research Centre of the Russian Academy of Sciences (IBG UFRC RAS), 450054 Ufa, Russia.

Life Improvement by Future Technologies (LIFT) Center, 121205 Moscow, Russia.

出版信息

Int J Mol Sci. 2025 Aug 26;26(17):8285. doi: 10.3390/ijms26178285.

DOI:10.3390/ijms26178285
PMID:40943207
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12428714/
Abstract

The poultry industry, a globally fast growing agricultural sector, provides affordable animal protein due to high efficiency. are the most common domestic birds. Hybrid chicken breeds (crosses) are widely used to achieve high productivity. Maintaining industry competitiveness requires constant genetic selection of parent stock to improve performance traits. Genetic studies, which are essential in modern breeding programs, help identify genome variants linked to economically important traits and preserve population health. Next-generation sequencing (NGS) has identified millions of single nucleotide polymorphisms (SNPs) and insertions/deletions (INDELs), enabling detection of genome-wide regions associated with selection traits. Recent studies have pinpointed such regions using broiler lines, laying hen lines, or pooled genomic data. This review discusses advances in chicken genomic and transcriptomic research focused on traits enhancing meat breed performance and reproductive abilities. Special attention is given to transcriptome studies revealing regulatory mechanisms and key signaling pathways involved in artificial molting, as well as metagenome studies investigating resistance to infectious diseases and climate adaptation. Finally, a dedicated section highlights CRISPR/Cas genomic editing techniques for targeted genome modification in chicken genomics.

摘要

家禽产业是全球快速发展的农业部门,因其高效率而提供了价格亲民的动物蛋白。鸡是最常见的家禽。杂交鸡品种(杂交种)被广泛用于实现高生产力。保持行业竞争力需要对亲本进行持续的基因选择以改善生产性能性状。基因研究在现代育种计划中至关重要,有助于识别与经济上重要的性状相关的基因组变异并维护种群健康。新一代测序(NGS)已识别出数百万个单核苷酸多态性(SNP)和插入/缺失(INDEL),从而能够检测与选择性状相关的全基因组区域。最近的研究已使用肉鸡品系、蛋鸡品系或汇集的基因组数据确定了此类区域。本综述讨论了鸡基因组和转录组研究的进展,重点关注提高肉用品种性能和繁殖能力的性状。特别关注揭示人工换羽所涉及的调控机制和关键信号通路的转录组研究,以及调查对传染病的抗性和气候适应性的宏基因组研究。最后,一个专门的部分重点介绍了用于鸡基因组学中靶向基因组修饰的CRISPR/Cas基因组编辑技术。

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本文引用的文献

1
The mechanism of egg production improvement in laying hens before and after molting revealed by transcriptome and metabolome integration.转录组和代谢组整合揭示蛋鸡换羽前后产蛋性能改善的机制
Poult Sci. 2025 Apr 2;104(7):105125. doi: 10.1016/j.psj.2025.105125.
2
Profiling the diversity of the village chicken faecal microbiota using 16S rRNA gene and metagenomic sequencing data to reveal patterns of gut microbiome signatures.利用16S rRNA基因和宏基因组测序数据剖析乡村鸡粪便微生物群的多样性,以揭示肠道微生物组特征模式。
Front Microbiol. 2025 Feb 4;15:1487595. doi: 10.3389/fmicb.2024.1487595. eCollection 2024.
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Genetically modified chickens as bioreactors for protein-based drugs.
转基因鸡作为基于蛋白质药物的生物反应器。
Front Genome Ed. 2025 Jan 7;6:1522837. doi: 10.3389/fgeed.2024.1522837. eCollection 2024.
4
Transcriptomic insight into the underlying mechanism of induced molting on reproductive remodeling, performance and egg quality in laying hen.转录组学洞察蛋鸡强制换羽对生殖重塑、生产性能和蛋品质的潜在机制。
Poult Sci. 2025 Feb;104(2):104692. doi: 10.1016/j.psj.2024.104692. Epub 2024 Dec 18.
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Genome of Russian Snow-White Chicken Reveals Genetic Features Associated with Adaptations to Cold and Diseases.俄罗斯白来航鸡基因组揭示了与适应寒冷和疾病相关的遗传特征。
Int J Mol Sci. 2024 Oct 15;25(20):11066. doi: 10.3390/ijms252011066.
6
Metagenomic profiling uncovers microbiota and antibiotic resistance patterns across human, chicken, pig fecal, and soil environments.宏基因组分析揭示了人类、鸡、猪粪便和土壤环境中的微生物群落和抗生素耐药模式。
Sci Total Environ. 2024 Oct 15;947:174734. doi: 10.1016/j.scitotenv.2024.174734. Epub 2024 Jul 14.
7
Investigating the genetic determination of duration-of-fertility trait in breeding hens.研究种母鸡繁殖力持续时间性状的遗传决定因素。
Sci Rep. 2024 Jun 27;14(1):14819. doi: 10.1038/s41598-024-65675-0.
8
Fasting-Induced Molting Impacts the Intestinal Health by Altering the Gut Microbiota.禁食诱导的蜕皮通过改变肠道微生物群影响肠道健康。
Animals (Basel). 2024 May 31;14(11):1640. doi: 10.3390/ani14111640.
9
Genome-wide association study identifies a novel candidate gene for egg production traits in chickens.全基因组关联研究确定了鸡产蛋性状的一个新候选基因。
Anim Genet. 2024 Jun;55(3):480-483. doi: 10.1111/age.13427. Epub 2024 Apr 11.
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Poult Sci. 2024 May;103(5):103589. doi: 10.1016/j.psj.2024.103589. Epub 2024 Feb 24.