Gilyazova Irina, Korytina Gulnaz, Kochetova Olga, Savelieva Olga, Mikhaylova Elena, Vershinina Zilya, Chumakova Anna, Markelov Vitaliy, Abdeeva Gulshat, Karunas Alexandra, Khusnutdinova Elza, Gusev Oleg
Institute of Biochemistry and Genetics-Subdivision of the Ufa Federal Research Centre of the Russian Academy of Sciences (IBG UFRC RAS), 450054 Ufa, Russia.
Life Improvement by Future Technologies (LIFT) Center, 121205 Moscow, Russia.
Int J Mol Sci. 2025 Aug 26;26(17):8285. doi: 10.3390/ijms26178285.
The poultry industry, a globally fast growing agricultural sector, provides affordable animal protein due to high efficiency. are the most common domestic birds. Hybrid chicken breeds (crosses) are widely used to achieve high productivity. Maintaining industry competitiveness requires constant genetic selection of parent stock to improve performance traits. Genetic studies, which are essential in modern breeding programs, help identify genome variants linked to economically important traits and preserve population health. Next-generation sequencing (NGS) has identified millions of single nucleotide polymorphisms (SNPs) and insertions/deletions (INDELs), enabling detection of genome-wide regions associated with selection traits. Recent studies have pinpointed such regions using broiler lines, laying hen lines, or pooled genomic data. This review discusses advances in chicken genomic and transcriptomic research focused on traits enhancing meat breed performance and reproductive abilities. Special attention is given to transcriptome studies revealing regulatory mechanisms and key signaling pathways involved in artificial molting, as well as metagenome studies investigating resistance to infectious diseases and climate adaptation. Finally, a dedicated section highlights CRISPR/Cas genomic editing techniques for targeted genome modification in chicken genomics.
家禽产业是全球快速发展的农业部门,因其高效率而提供了价格亲民的动物蛋白。鸡是最常见的家禽。杂交鸡品种(杂交种)被广泛用于实现高生产力。保持行业竞争力需要对亲本进行持续的基因选择以改善生产性能性状。基因研究在现代育种计划中至关重要,有助于识别与经济上重要的性状相关的基因组变异并维护种群健康。新一代测序(NGS)已识别出数百万个单核苷酸多态性(SNP)和插入/缺失(INDEL),从而能够检测与选择性状相关的全基因组区域。最近的研究已使用肉鸡品系、蛋鸡品系或汇集的基因组数据确定了此类区域。本综述讨论了鸡基因组和转录组研究的进展,重点关注提高肉用品种性能和繁殖能力的性状。特别关注揭示人工换羽所涉及的调控机制和关键信号通路的转录组研究,以及调查对传染病的抗性和气候适应性的宏基因组研究。最后,一个专门的部分重点介绍了用于鸡基因组学中靶向基因组修饰的CRISPR/Cas基因组编辑技术。