Kim Jonathan I, Ellsworth Zachary, Dunnington Erin L, Mehta Nidhi R, Zensho Chisa, Fu Dan
Department of Chemistry, University of Washington, Seattle, WA 98195, United States.
bioRxiv. 2025 Sep 3:2025.08.28.672954. doi: 10.1101/2025.08.28.672954.
Super-resolution fluorescence microscopy has transformed the study of biological structures and functions beyond the diffraction limit. Unlike fluorescence methods, label-free chemical imaging, mostly based on Raman and infrared spectroscopy, provides intrinsic molecular contrast, enabling the study of biomolecules, nanostructures, drug molecules, and metabolites that cannot be easily tagged. However, while a wide range of fluorescence-based super-resolution techniques are well-established, extending super-resolution to label-free chemical imaging has remained challenging due to low signal levels and limited resolution improvement. Super-resolution stimulated Raman scattering microscopy (SRS) is most promising due to its high sensitivity and imaging speed. Similar to fluorescence, existing SRS super-resolution approaches are mostly based on either photoswitching/saturation of molecular labels or sample expansion, which suffers from poor sensitivity due to limitations in labeling density or signal dilution, respectively. Moreover, axial resolution is typically much worse than lateral resolution, yet most super-resolution SRS techniques focused on improving lateral resolution. In this work, we combine stimulated Raman scattering (SRS) with 4Pi-interferometry to significantly improve the axial resolution by nearly 7-fold. We report on the characterization of improvements in imaging sensitivity and axial resolution using 80 nm polystyrene beads. Harnessing the improved axial resolution, we demonstrate super-resolution 4Pi-SRS imaging in resolving small lipid droplet structures in mammalian cells and lipid membranes in cells. Because 4Pi-SRS uses interferometry to improve axial resolution, it is completely orthogonal to all previous super-resolution SRS techniques, including visible excitation, photoswitching, sample expansion, and computational approaches, thus it is straightforward to combine them to achieve much higher resolution chemical imaging than currently possible.
超分辨率荧光显微镜技术已经改变了对超出衍射极限的生物结构和功能的研究。与荧光方法不同,无标记化学成像主要基于拉曼光谱和红外光谱,提供内在的分子对比度,能够研究难以标记的生物分子、纳米结构、药物分子和代谢物。然而,虽然广泛的基于荧光的超分辨率技术已经成熟,但由于信号水平低和分辨率提升有限,将超分辨率扩展到无标记化学成像仍然具有挑战性。超分辨率受激拉曼散射显微镜(SRS)因其高灵敏度和成像速度而最具前景。与荧光类似,现有的SRS超分辨率方法大多基于分子标记的光开关/饱和或样品膨胀,分别由于标记密度的限制或信号稀释而灵敏度较差。此外,轴向分辨率通常比横向分辨率差得多,但大多数超分辨率SRS技术都专注于提高横向分辨率。在这项工作中,我们将受激拉曼散射(SRS)与4Pi干涉测量法相结合,将轴向分辨率显著提高了近7倍。我们报告了使用80纳米聚苯乙烯珠对成像灵敏度和轴向分辨率改进的表征。利用改进后的轴向分辨率,我们展示了超分辨率4Pi-SRS成像在解析哺乳动物细胞中的小脂滴结构和细胞中的脂质膜方面的应用。由于4Pi-SRS使用干涉测量法来提高轴向分辨率,它与所有先前的超分辨率SRS技术完全正交,包括可见光激发、光开关、样品膨胀和计算方法,因此可以直接将它们结合起来,以实现比目前更高分辨率的化学成像。