Kojima Kenji K
Genetic Information Research Institute, East Palo Alto, CA 94303, USA.
J Gen Virol. 2025 Sep;106(9). doi: 10.1099/jgv.0.002143.
Eukaryotic reverse transcriptase genes are mostly incorporated into viruses or transposons. Among the six reported families of reverse-transcribing viruses, three families (/, / and /) have proliferated mostly as transposons, collectively known as LTR retrotransposons. was reported as a unique lineage of the / family. While most LTR retrotransposons generate 4 to 6 bp target site duplications (TSDs) upon integration and contain 5'-TG. CA-3' termini, generates 3 bp TSDs and contains 5'-CG.CG-3' termini. Here, the distribution and diversity of were extensively investigated from the available genome sequences. In addition to the six animal phyla reported previously, was characterized for the first time in Hemichordata, Priapulida, Annelida, Phoronida and Brachiopoda. The unique terminal nucleotides of are very well conserved. The phylogenetic analysis with various combinations of conserved domains supported the independent position of from any established retroelement groups, most likely as the sister lineage of the group including /, , , Lokiretroviruses and LTR retrotransposons. is here proposed as a new superfamily of LTR retrotransposons.
真核生物逆转录酶基因大多整合到病毒或转座子中。在已报道的六个逆转录病毒家族中,有三个家族(/、/和/)主要作为转座子增殖,统称为长末端重复序列逆转座子(LTR逆转座子)。据报道,是/家族的一个独特谱系。虽然大多数LTR逆转座子在整合时会产生4到6个碱基对的靶位点重复序列(TSD),并含有5'-TG.CA-3'末端,但会产生3个碱基对的TSD,并含有5'-CG.CG-3'末端。在此,我们从现有的基因组序列中广泛研究了的分布和多样性。除了之前报道的六个动物门之外,首次在半索动物门、鳃曳动物门、环节动物门、帚虫动物门和腕足动物门中对进行了表征。的独特末端核苷酸非常保守。使用保守结构域的各种组合进行的系统发育分析支持了相对于任何已确立的逆转元件组的独立位置,最有可能作为包括/、、、洛克逆转录病毒和LTR逆转座子在内的组的姐妹谱系。在此,被提议作为LTR逆转座子的一个新超家族。