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整合孟德尔随机化和机器学习以识别慢性阻塞性肺疾病中与缺氧相关的诊断生物标志物及因果关系

Integrating Mendelian Randomization and Machine Learning to Identify Hypoxia-Related Diagnostic Biomarkers and Causal Relationship in COPD.

作者信息

Fu Wenhui, Liu Yangli, Li Renjie, Jin Haiying

机构信息

Department of Respiratory Medicine, Jinyun People's Hospital, Lishui, Zhejiang, 321400, People's Republic of China.

出版信息

Int J Chron Obstruct Pulmon Dis. 2025 Sep 12;20:3187-3202. doi: 10.2147/COPD.S524381. eCollection 2025.

DOI:10.2147/COPD.S524381
PMID:40964458
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12439713/
Abstract

BACKGROUND

Chronic obstructive pulmonary disease (COPD) involves progressive lung function decline, with hypoxia playing a key pathogenic role. However, systematic investigations focusing on hypoxia-related genes (HRGs) in COPD remain limited.

METHODS

We applied machine learning to identify HRG-associated diagnostic biomarkers and evaluated their performance via Receiver Operating Characteristic (ROC) analysis. Mendelian randomization (MR) was conducted to assess causal relationships between candidate genes and COPD. A nomogram model was constructed to evaluate clinical utility, and a ceRNA network was developed using ENCORI database.

RESULTS

Six HRG-based diagnostic biomarkers were identified, including , which demonstrated strong diagnostic value (AUC > 0.8). MR analysis revealed a significant causal effect of expression on COPD risk (OR = 1.32, 95% CI: 1.02-1.71, P < 0.05). Functional evidence suggests promotes hypoxia-induced metabolic reprogramming in airway epithelial cells. The constructed nomogram showed good clinical applicability. ceRNA analysis highlighted , , and as potential upstream regulators.

CONCLUSION

Our findings identify as a causal and diagnostically relevant gene in COPD, offering novel insight into hypoxia-driven disease mechanisms and supporting future personalized therapeutic strategies.

摘要

背景

慢性阻塞性肺疾病(COPD)涉及肺功能进行性下降,缺氧在其发病机制中起关键作用。然而,针对COPD中缺氧相关基因(HRGs)的系统研究仍然有限。

方法

我们应用机器学习来识别与HRG相关的诊断生物标志物,并通过受试者工作特征(ROC)分析评估其性能。进行孟德尔随机化(MR)以评估候选基因与COPD之间的因果关系。构建列线图模型以评估临床实用性,并使用ENCORI数据库开发ceRNA网络。

结果

鉴定出6种基于HRG的诊断生物标志物,包括 ,其显示出强大的诊断价值(AUC>0.8)。MR分析显示 表达对COPD风险有显著因果效应(OR = 1.32,95%CI:1.02 - 1.71,P < 0.05)。功能证据表明 促进气道上皮细胞中缺氧诱导的代谢重编程。构建的列线图显示出良好的临床适用性。ceRNA分析突出了 、 和 作为潜在的上游调节因子。

结论

我们的研究结果确定 是COPD中的一个因果相关且与诊断相关的基因,为缺氧驱动的疾病机制提供了新的见解,并支持未来的个性化治疗策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/445a/12439713/a15c1390402e/COPD-20-3187-g0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/445a/12439713/d48b37eed91f/COPD-20-3187-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/445a/12439713/7341aa473e29/COPD-20-3187-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/445a/12439713/67b8855b7692/COPD-20-3187-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/445a/12439713/f77a56127a78/COPD-20-3187-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/445a/12439713/fc7c12176c8a/COPD-20-3187-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/445a/12439713/62191164fbb9/COPD-20-3187-g0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/445a/12439713/a15c1390402e/COPD-20-3187-g0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/445a/12439713/d48b37eed91f/COPD-20-3187-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/445a/12439713/7341aa473e29/COPD-20-3187-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/445a/12439713/67b8855b7692/COPD-20-3187-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/445a/12439713/f77a56127a78/COPD-20-3187-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/445a/12439713/fc7c12176c8a/COPD-20-3187-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/445a/12439713/62191164fbb9/COPD-20-3187-g0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/445a/12439713/a15c1390402e/COPD-20-3187-g0007.jpg

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