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II型光合反应中心电子转移和光保护中色氨酸残基的能量学

Energetics of tryptophan residues in electron transfer and photoprotection of type-II photosynthetic reaction centers.

作者信息

Noji Tomoyasu, Saito Keisuke, Ishikita Hiroshi

机构信息

Department of Applied Chemistry, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8654, Japan.

Research Center for Advanced Science and Technology, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan.

出版信息

PNAS Nexus. 2025 Sep 1;4(9):pgaf278. doi: 10.1093/pnasnexus/pgaf278. eCollection 2025 Sep.

Abstract

Tryptophan is the strongest UV chromophore in proteins, and its biosynthesis is the most energy-consuming among all amino acids. In the transmembrane region of purple bacterial photosynthetic reaction centers (PbRC), tryptophan residues are densely concentrated near the inactive electron-transfer branch in subunit M, forming part of the carotenoid binding site. We investigated the redox potentials ( ) of tryptophan residues in PbRC and O-evolving photosystem II (PSII) by solving the linear Poisson-Boltzmann equation, considering equilibrium with all titratable sites in the entire protein. The tryptophan mediating superexchange electron transfer between the active (bacterio)pheophytin and primary quinone exhibits the highest value in both PbRC and PSII. In contrast, in PSII, D1-Trp14, oxidized under strong light to trigger the degradation of photodamaged D1 protein, has the lowest value. In PbRC, a chain of tryptophan residues near the inactive branch forms an cascade. Quantum mechanical/molecular mechanical calculations suggest that this chain enables electron hole hopping toward the carotenoid, effectively dissipating harmful UV energy. This mechanism likely reflects the photoprotective strategy of PbRC, focusing on UV tolerance rather than oxidative stress.

摘要

色氨酸是蛋白质中最强的紫外发色团,其生物合成是所有氨基酸中最耗能的。在紫色细菌光合反应中心(PbRC)的跨膜区域,色氨酸残基密集地集中在亚基M中无活性的电子传递分支附近,构成类胡萝卜素结合位点的一部分。我们通过求解线性泊松 - 玻尔兹曼方程,并考虑与整个蛋白质中所有可滴定位点的平衡,研究了PbRC和放氧光合系统II(PSII)中色氨酸残基的氧化还原电位()。介导活性(细菌)脱镁叶绿素与初级醌之间超交换电子转移的色氨酸在PbRC和PSII中均表现出最高的值。相反,在PSII中,强光下氧化以触发光损伤D1蛋白降解的D1 - Trp14具有最低的值。在PbRC中,无活性分支附近的色氨酸残基链形成一个级联。量子力学/分子力学计算表明,该链使电子空穴向类胡萝卜素跳跃,有效地耗散有害的紫外能量。这种机制可能反映了PbRC的光保护策略,侧重于耐紫外性而非氧化应激。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea61/12445680/14ab51a8b69f/pgaf278f1.jpg

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