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Fueling chromosomal gene diversification and artificial evolution with CRISPR.

作者信息

Zhu Ruiying, Ren Chuanhong, Bao Zehua

机构信息

Key Laboratory of Biomass Chemical Engineering of Ministry of Education, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310058, Zhejiang, China.

Zhejiang Key Laboratory of Intelligent Manufacturing for Functional Chemicals, ZJU-Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University, Hangzhou, 311215, Zhejiang, China.

出版信息

Genome Biol. 2025 Sep 23;26(1):297. doi: 10.1186/s13059-025-03756-7.

DOI:10.1186/s13059-025-03756-7
PMID:40988083
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12455791/
Abstract

Gene diversification is an effective approach to massively dissecting variant functions and evolving sequences when paired with an appropriate assay. In vitro mutagenesis and ectopic gene expression, however, fail to simulate the endogenous regulatory environment of the variants. The development of clustered, regularly interspaced short palindromic repeats (CRISPR) systems has greatly boosted the efficiency of targeted gene diversification in various species. Here, we review recent CRISPR-assisted methods for chromosomal gene diversification and artificial evolution, focusing on the advantages and limitations of each approach, and propose possible strategies to overcome current limitations and directions in future technology development.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47e5/12455791/0463487a2a0d/13059_2025_3756_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47e5/12455791/6866cea9ab39/13059_2025_3756_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47e5/12455791/66e6965fc800/13059_2025_3756_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47e5/12455791/d2352ff4edcc/13059_2025_3756_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47e5/12455791/fed31f820502/13059_2025_3756_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47e5/12455791/7b70533dc90f/13059_2025_3756_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47e5/12455791/7f43c94908bc/13059_2025_3756_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47e5/12455791/0463487a2a0d/13059_2025_3756_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47e5/12455791/6866cea9ab39/13059_2025_3756_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47e5/12455791/66e6965fc800/13059_2025_3756_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47e5/12455791/d2352ff4edcc/13059_2025_3756_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47e5/12455791/fed31f820502/13059_2025_3756_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47e5/12455791/7b70533dc90f/13059_2025_3756_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47e5/12455791/7f43c94908bc/13059_2025_3756_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47e5/12455791/0463487a2a0d/13059_2025_3756_Fig7_HTML.jpg

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本文引用的文献

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Rewriting regulatory DNA to dissect and reprogram gene expression.重写调控性DNA以剖析和重新编程基因表达。
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Mechanistic Insights into the Tools for Intracellular Protein Delivery.细胞内蛋白质递送工具的机制洞察
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CASCADE-Cas3 enables highly efficient genome engineering in Streptomyces species.CASCADE-Cas3可实现链霉菌属物种中的高效基因组工程。
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Post-assembly Plasmid Amplification for Increased Transformation Yields in and .组装后质粒扩增以提高在[具体内容1]和[具体内容2]中的转化效率
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Enhancing Substrate Preference of Iridoid Synthase via Focused Polarity-Steric Mutagenesis Scanning.通过聚焦极性-空间诱变扫描增强环烯醚萜合酶的底物偏好性
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Functional evaluation and clinical classification of BRCA2 variants.BRCA2变异体的功能评估与临床分类
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Genome editing with the HDR-enhancing DNA-PKcs inhibitor AZD7648 causes large-scale genomic alterations.使用增强同源定向修复(HDR)的DNA依赖蛋白激酶催化亚基(DNA-PKcs)抑制剂AZD7648进行基因组编辑会导致大规模基因组改变。
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