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通过冷冻电镜和分子动力学模拟揭示的人血管紧张素 I 转换酶的二聚化及动力学

Dimerization and dynamics of human angiotensin-I converting enzyme revealed by cryo-EM and MD simulations.

作者信息

Mancl Jordan M, Wu Xiaoyang, Zhao Minglei, Tang Wei-Jen

机构信息

Ben-May Department for Cancer Research, University of Chicago, Chicago,Illinois, United States.

Department of Biochemistry and Molecular Biology,University of Chicago, Chicago, Illinois, United States.

出版信息

Elife. 2025 Sep 24;14:RP106044. doi: 10.7554/eLife.106044.

DOI:10.7554/eLife.106044
PMID:40988601
Abstract

Angiotensin-I converting enzyme (ACE) regulates the levels of disparate bioactive peptides, notably converting angiotensin-I to angiotensin-II and degrading amyloid beta. ACE is a heavily glycosylated dimer, containing four analogous catalytic sites, and exists in membrane-bound and soluble (sACE) forms. ACE inhibition is a frontline, FDA-approved, therapy for cardiovascular diseases yet is associated with significant side effects, including higher rates of lung cancer. To date, structural studies have been confined to individual domains or partially denatured cryo-EM structures. Here, we report the cryo-EM structure of the glycosylated full human sACE dimer. We resolved four structural states at 2.99 - 3.65 Å resolution which are primarily differentiated by varying degrees of solvent accessibility to the active sites and reveal the full dimerization interface. We also employed all-atom molecular dynamics (MD) simulations and heterogeneity analysis in cryoSPARC, cryoDRGN, and RECOVAR to elucidate the conformational dynamics of sACE and identify key regions mediating conformational change. We identify differences in the mechanisms governing the conformational dynamics of individual domains that have implications for the design of domain-specific sACE modulators.

摘要

血管紧张素转换酶(ACE)调节多种生物活性肽的水平,特别是将血管紧张素I转化为血管紧张素II并降解β淀粉样蛋白。ACE是一种高度糖基化的二聚体,包含四个类似的催化位点,以膜结合形式和可溶性(sACE)形式存在。ACE抑制是一种经美国食品药品监督管理局(FDA)批准的心血管疾病一线治疗方法,但会产生显著的副作用,包括肺癌发病率升高。迄今为止,结构研究仅限于单个结构域或部分变性的冷冻电镜结构。在此,我们报道了糖基化的完整人sACE二聚体的冷冻电镜结构。我们以2.99 - 3.65 Å的分辨率解析了四种结构状态,这些状态主要通过活性位点不同程度的溶剂可及性来区分,并揭示了完整的二聚化界面。我们还在cryoSPARC、cryoDRGN和RECOVAR中采用全原子分子动力学(MD)模拟和异质性分析,以阐明sACE的构象动力学,并确定介导构象变化的关键区域。我们确定了控制各个结构域构象动力学的机制差异,这对结构域特异性sACE调节剂的设计具有启示意义。

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Dimerization and dynamics of human angiotensin-I converting enzyme revealed by cryo-EM and MD simulations.通过冷冻电镜和分子动力学模拟揭示的人血管紧张素 I 转换酶的二聚化及动力学
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Dimerization and dynamics of angiotensin-I converting enzyme revealed by cryoEM and MD simulations.通过冷冻电镜和分子动力学模拟揭示血管紧张素转换酶的二聚化及动力学
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引用本文的文献

1
Capturing enzymes in motion.捕捉处于运动状态的酶。
Elife. 2025 Sep 24;14:e108727. doi: 10.7554/eLife.108727.

本文引用的文献

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Cryo-EM heterogeneity analysis using regularized covariance estimation and kernel regression.使用正则化协方差估计和核回归的冷冻电镜异质性分析。
Proc Natl Acad Sci U S A. 2025 Mar 4;122(9):e2419140122. doi: 10.1073/pnas.2419140122. Epub 2025 Feb 26.
2
The metalloproteinase ADAM10 sheds angiotensin-converting enzyme (ACE) from the pulmonary endothelium as a soluble, functionally active convertase.金属蛋白酶 ADAM10 将血管紧张素转换酶 (ACE) 从肺内皮细胞上切割下来,形成一种可溶性的、具有功能活性的转换酶。
FASEB J. 2024 Oct 15;38(19):e70105. doi: 10.1096/fj.202402069R.
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Advances in the structural basis for angiotensin-1 converting enzyme (ACE) inhibitors.
血管紧张素转化酶(ACE)抑制剂结构基础研究进展。
Biosci Rep. 2024 Aug 28;44(8). doi: 10.1042/BSR20240130.
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Association between angiotensin-converting enzyme inhibitor-induced cough and the risk of lung cancer: a Mendelian randomization study.血管紧张素转换酶抑制剂所致咳嗽与肺癌风险之间的关联:一项孟德尔随机化研究
Front Pharmacol. 2023 Sep 20;14:1267924. doi: 10.3389/fphar.2023.1267924. eCollection 2023.
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The effects of enhancing angiotensin converting enzyme in myelomonocytes on ameliorating Alzheimer's-related disease and preserving cognition.提高骨髓单核细胞中血管紧张素转换酶对改善阿尔茨海默病相关疾病及维持认知的作用。
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Amyloid β-based therapy for Alzheimer's disease: challenges, successes and future.阿尔茨海默病的淀粉样β为基础的治疗:挑战、成功与未来。
Signal Transduct Target Ther. 2023 Jun 30;8(1):248. doi: 10.1038/s41392-023-01484-7.
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Conformational heterogeneity and probability distributions from single-particle cryo-electron microscopy.单颗粒低温电子显微镜中的构象异质性和概率分布。
Curr Opin Struct Biol. 2023 Aug;81:102626. doi: 10.1016/j.sbi.2023.102626. Epub 2023 Jun 11.
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3DFlex: determining structure and motion of flexible proteins from cryo-EM.3DFlex:从冷冻电镜中确定柔性蛋白的结构和运动。
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MDSPACE: Extracting Continuous Conformational Landscapes from Cryo-EM Single Particle Datasets Using 3D-to-2D Flexible Fitting based on Molecular Dynamics Simulation.MDSPACE:使用基于分子动力学模拟的 3D-2D 柔性拟合从冷冻电镜单颗粒数据集提取连续构象景观。
J Mol Biol. 2023 May 1;435(9):167951. doi: 10.1016/j.jmb.2023.167951. Epub 2023 Jan 10.
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Association between angiotensin-converting enzyme inhibitors and the risk of lung cancer: a systematic review and meta-analysis.血管紧张素转化酶抑制剂与肺癌风险的关系:系统评价和荟萃分析。
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