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(宏观)分子拥挤效应:超越体积排斥

(Macro)Molecular Crowding Effects Beyond Volume Exclusion.

作者信息

Zaslavsky Boris Y, Uversky Vladimir N

机构信息

Cleveland Diagnostics, Cleveland, OH, USA.

Department of Molecular Medicine and USF Health Byrd Alzheimer's Research Institute, Morsani College of Medicine, University of South Florida, Tampa, FL, USA.

出版信息

Subcell Biochem. 2025;109:41-67. doi: 10.1007/978-3-032-03370-3_3.

Abstract

Macromolecular crowding affects many areas, including protein folding, binding of small molecules, enzymatic activity, interaction with nucleic acids, protein aggregation, and protein-protein interactions. While the common belief has been that the primary impact of crowded environments on the function, structure, thermodynamics, and aggregation of a protein can be described in terms of excluded volume effects, it has now become clear that other factors, which originate from high concentrations of "inert" macromolecules in crowded solution, must be considered in order to get a clearer understanding a protein's behavior in a crowded environment. This review will highlight several important factors that arise in a crowded environment, including perturbed diffusion, viscosity, soft interactions, direct physical interactions between the crowding agents and proteins, and, most importantly, the effects of crowders on solvent properties.

摘要

大分子拥挤效应影响许多领域,包括蛋白质折叠、小分子结合、酶活性、与核酸的相互作用、蛋白质聚集以及蛋白质-蛋白质相互作用。虽然人们普遍认为拥挤环境对蛋白质功能、结构、热力学和聚集的主要影响可以用排阻体积效应来描述,但现在已经清楚,为了更清楚地理解蛋白质在拥挤环境中的行为,必须考虑其他因素,这些因素源于拥挤溶液中高浓度的“惰性”大分子。本综述将重点介绍在拥挤环境中出现的几个重要因素,包括扩散扰动、粘度、软相互作用、拥挤剂与蛋白质之间的直接物理相互作用,以及最重要的,拥挤剂对溶剂性质的影响。

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