Zhang Lihong, Zhang Wenhu, Luo Yongjian, Liu Jun, Li Qing, Liu Qiongheng
Guangdong Key Laboratory for Crop Germplasm Resources Preservation and Utilization, Agro-Biological Gene Research Center, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, China.
Maoming Agricultural Science and Technology Extension Center, Maoming 525000, China.
Biology (Basel). 2025 Sep 19;14(9):1296. doi: 10.3390/biology14091296.
L. belongs to the Apiaceae family and is a perennial herb. The entire plant is rich in essential oils, which have a distinctive aroma similar to cilantro. This plant exhibits significant biological activity and possesses characteristics such as disease resistance and antimicrobial properties, showing great potential in medical and food applications. Additionally, its essential oil has substantial commercial value. Mitochondria play a crucial role as organelles within plant cells; however, the mitochondrial genome of remains underexplored. To fill this research gap, we conducted sequencing and assembly of the mitochondrial genome of , aiming to uncover its genetic mechanisms and evolutionary trajectories. Our investigation reveals that the mitochondrial genome of is a circular structure, similar to that of other species, with a length of 241,660 bp and a GC content of 45.35%, which is within the range observed in other organisms. This genome encodes 59 genes, comprising 37 protein-coding sequences, 18 tRNA genes, and 4 rRNA genes. Comparative analysis highlighted 16 homologous regions between the mitochondrial and chloroplast genomes, with the longest segment spanning 992 bp. By analyzing 37 protein-coding genes (PCGs), we identified 479 potential RNA editing sites, which induce the formation of stop codons in the and genes, as well as start codons in the , , , , , and genes. Meanwhile, the genome shows a preference for A/T bases and A/T-ending codons, with 32 codons having a relative synonymous codon usage (RSCU) value greater than 1. The codon usage bias is relatively weak and mainly influenced by natural selection. Most PCGs are under purifying selection (Ka/Ks < 1), while only a few genes, such as and may be under positive selection. Phylogenetic analysis of mitochondrial PCGs from 21 species showed at the basal node of Apiaceae, consistent with the latest APG angiosperm classification and chloroplast genome-based phylogenetic relationships. In summary, our comprehensive characterization of the mitochondrial genome not only provides novel insights into its evolutionary history and genetic regulation but also establishes a critical genomic resource for future molecular breeding efforts targeting mitochondrial-associated traits in this economically important species.
L.属于伞形科,是一种多年生草本植物。全株富含精油,具有类似香菜的独特香气。这种植物具有显著的生物活性,具备抗病和抗菌等特性,在医学和食品应用方面展现出巨大潜力。此外,其精油具有很高的商业价值。线粒体作为植物细胞内的细胞器发挥着关键作用;然而,L.的线粒体基因组仍未得到充分研究。为填补这一研究空白,我们对L.的线粒体基因组进行了测序和组装,旨在揭示其遗传机制和进化轨迹。我们的研究表明,L.的线粒体基因组是环状结构,与其他物种相似,长度为241,660 bp,GC含量为45.35%,处于其他生物观察到的范围内。该基因组编码59个基因,包括37个蛋白质编码序列、18个tRNA基因和4个rRNA基因。比较分析突出了线粒体和叶绿体基因组之间的16个同源区域,最长片段跨度为992 bp。通过分析37个蛋白质编码基因(PCGs),我们确定了479个潜在的RNA编辑位点,这些位点在 和 基因中诱导终止密码子的形成,以及在 、 、 、 、 和 基因中诱导起始密码子的形成。同时,该基因组偏好A/T碱基和以A/T结尾的密码子,有32个密码子的相对同义密码子使用(RSCU)值大于1。密码子使用偏好相对较弱,主要受自然选择影响。大多数PCGs处于纯化选择(Ka/Ks < 1),而只有少数基因,如 和 可能处于正选择。对21个物种的线粒体PCGs进行的系统发育分析表明,L.位于伞形科的基部节点,与最新的APG被子植物分类和基于叶绿体基因组的系统发育关系一致。总之,我们对L.线粒体基因组的全面表征不仅为其进化历史和遗传调控提供了新的见解,也为未来针对这种经济重要物种中线粒体相关性状的分子育种努力建立了关键的基因组资源。