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植物细胞器基因组:完成了很多,还有更多要做。

Plant organellar genomes: much done, much more to do.

机构信息

Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China; College of Science, Health, Engineering and Education, Murdoch University, Perth, WA 6000-6999, Australia.

Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China; Marine College, Shandong University, Weihai, 264209, China.

出版信息

Trends Plant Sci. 2024 Jul;29(7):754-769. doi: 10.1016/j.tplants.2023.12.014. Epub 2024 Jan 13.

DOI:10.1016/j.tplants.2023.12.014
PMID:
38220520
Abstract

Plastids and mitochondria are the only organelles that possess genomes of endosymbiotic origin. In recent decades, advances in sequencing technologies have contributed to a meteoric rise in the number of published organellar genomes, and have revealed greatly divergent evolutionary trajectories. In this review, we quantify the abundance and distribution of sequenced plant organellar genomes across the plant tree of life. We compare numerous genomic features between the two organellar genomes, with an emphasis on evolutionary trajectories, transfers, the current state of organellar genome editing by transcriptional activator-like effector nucleases (TALENs), transcription activator-like effector (TALE)-mediated deaminase, and clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein (Cas), as well as genetic transformation. Finally, we propose future research to understand these different evolutionary trajectories, and genome-editing strategies to promote functional studies and eventually improve organellar genomes.

摘要

质体和线粒体是仅有的具有内共生起源基因组的细胞器。在最近几十年中,测序技术的进步使得已发表的细胞器基因组数量呈爆炸式增长,并揭示了它们具有非常不同的进化轨迹。在这篇综述中,我们量化了植物细胞器基因组在植物生命之树上的丰度和分布。我们比较了两个细胞器基因组之间的许多基因组特征,重点是进化轨迹、转移、转录激活因子样效应物核酸酶(TALENs)、转录激活因子样效应物(TALE)介导的脱氨酶和成簇规律间隔短回文重复(CRISPR)/CRISPR 相关蛋白(Cas)对细胞器基因组编辑的当前状态,以及遗传转化。最后,我们提出了未来的研究方向,以了解这些不同的进化轨迹和基因组编辑策略,从而促进功能研究,最终改善细胞器基因组。

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