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. 中DREB基因家族在非生物胁迫下的生物信息学分析及表达谱分析

Bioinformatics Analysis and Expression Profiling Under Abiotic Stress of the DREB Gene Family in .

作者信息

Cheng Linyuan, Shi Nana, Du Xiangrong, Huang Teng, Zhang Yaxin, Zhao Chenjie, Zhao Kun, Lin Zirun, Ma Denglin, Li Qiuling, Wang Fei, Yao Hua, Shen Haitao

机构信息

Key Laboratory of Xinjiang Phytomedicine Resource and Utilization of Ministry of Education, College of Life Sciences, Shihezi University, Shihezi 832003, China.

Key Laboratory of Oasis Town and Mountain-Basin System Ecology of Xinjiang Production and Construction Corps, Shihezi University, Shihezi 832003, China.

出版信息

Int J Mol Sci. 2025 Sep 22;26(18):9235. doi: 10.3390/ijms26189235.

Abstract

is an important medicinal plant exhibiting strong tolerance to abiotic stresses, including drought and salinity. DREB (Dehydration-Responsive Element-Binding) transcription factors, key members of the AP2/ERF family, play crucial roles in plant growth, development, and stress responses. Based on transcriptome data, we identified 18 DREB transcription factors in , designated to . Bioinformatics analysis revealed genomic sequences ranging from 534 to 2864 bp and coding sequence (CDS) lengths between 525 and 1509 bp. All GuDREB proteins contain a single AP2 domain, including the conserved YRG and RAYD elements, and were predicted to localize to the nucleus. Phylogenetic analysis clustered the DREBs with 61 DREBs into five subgroups, indicating evolutionary conservation. Promoter analysis detected seventeen stress-responsive -acting elements, encompassing hormone-responsive and abiotic stress-responsive motifs, suggesting diverse biological functions. Tissue-specific expression profiling revealed transcription in both aerial and underground parts. Drought stress induced varying degrees of expression, confirming their involvement in stress responses. Notably, expression increased significantly in underground parts, while showed pronounced upregulation in aerial parts under drought; the promoter contained the highest number of light-responsive elements (23), potentially explaining its aerial tissue specificity. Drought stress significantly increased abscisic acid (ABA) content. Underground parts exhibited higher initial sensitivity to drought, whereas aerial parts displayed a more sustained response; ABA levels overall showed an initial increase followed by a decline. This study expands the DREB gene database, provides a foundation for selecting stress-resistance genes, and offers insights into DREB functional roles in abiotic stress responses in this key medicinal species.

摘要

是一种重要的药用植物,对包括干旱和盐度在内的非生物胁迫表现出很强的耐受性。DREB(脱水响应元件结合)转录因子是AP2/ERF家族的关键成员,在植物生长、发育和胁迫响应中发挥着至关重要的作用。基于转录组数据,我们在中鉴定出18个DREB转录因子,命名为至。生物信息学分析显示基因组序列长度在534至2864 bp之间,编码序列(CDS)长度在525至1509 bp之间。所有GuDREB蛋白都包含一个单一的AP2结构域,包括保守的YRG和RAYD元件,并被预测定位于细胞核。系统发育分析将这些DREB与61个DREB聚类为五个亚组,表明其进化保守性。启动子分析检测到17个胁迫响应顺式作用元件,包括激素响应和非生物胁迫响应基序,表明其具有多种生物学功能。组织特异性表达谱显示在地上和地下部分均有转录。干旱胁迫诱导了不同程度的表达,证实了它们参与胁迫响应。值得注意的是,地下部分的表达显著增加,而在干旱条件下地上部分的表达则明显上调;的启动子包含最多的光响应元件(23个),这可能解释了其地上组织特异性。干旱胁迫显著增加了脱落酸(ABA)含量。地下部分对干旱表现出更高的初始敏感性,而地上部分则表现出更持续的响应;ABA水平总体上呈现先升高后下降的趋势。本研究扩展了DREB基因数据库,为选择抗逆基因提供了基础,并为该关键药用物种中DREB在非生物胁迫响应中的功能作用提供了见解。

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