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通过高碘酸盐-磷酸酶消化和化学氚标记对非放射性RNA片段进行序列分析:大寡核苷酸和含修饰核苷的寡核苷酸的表征

Sequence analysis of nonradioactive RNA fragments by periodate-phosphatase digestion and chemical tritium labeling: characterization of large oligonucleotides and oligonucleotides containing modified nucleosides.

作者信息

Randerath K, Randerath E, Chia L S, Gupta R C, Sivarajan M

出版信息

Nucleic Acids Res. 1974 Sep;1(9):1121-41. doi: 10.1093/nar/1.9.1121.

DOI:10.1093/nar/1.9.1121
PMID:4375807
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC344335/
Abstract

A tritium derivative method for sequence analysis of polyribonucleotides is detailed, which is based on borotritide reduction of oligonucleotide dialdehydes generated by treatment of polyribonucleotides with alkaline phosphatase and excess periodate at pH 8 (borate buffer; no primary amine present in the reaction mixture). While neither phosphatase nor periodate possess any intrinsic exonuclease activity their combination mimics an RNA-specific exonuclease ("pseudo-exonuclease"). Procedures are described for separation and characterization of tritiumlabeled oligonucleotide derivatives. The sequence is deduced by identification of labeled 3'-termini following separation of the reduced nucleotide intermediates according to chain length. The sensitivity of the method is indicated by the fact that as little as 0.01 O.D.260 unit of a nonradioactive decanucleotide is sufficient for sequence determination.

摘要

详细介绍了一种用于多聚核糖核苷酸序列分析的氚衍生物方法,该方法基于在pH 8(硼酸盐缓冲液;反应混合物中不存在伯胺)条件下,用碱性磷酸酶和过量高碘酸盐处理多聚核糖核苷酸所产生的寡核苷酸二醛的硼氚化物还原反应。虽然磷酸酶和高碘酸盐都不具有任何内在的核酸外切酶活性,但它们的组合模拟了一种RNA特异性核酸外切酶(“假核酸外切酶”)。描述了分离和表征氚标记寡核苷酸衍生物的程序。通过根据链长分离还原的核苷酸中间体后鉴定标记的3'-末端来推导序列。该方法的灵敏度体现在,低至0.01 O.D.260单位的非放射性十聚核苷酸就足以进行序列测定。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bfec/344335/3059dc492bf8/nar00518-0050-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bfec/344335/3059dc492bf8/nar00518-0050-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bfec/344335/3059dc492bf8/nar00518-0050-a.jpg

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Sequence analysis of nonradioactive RNA fragments by periodate-phosphatase digestion and chemical tritium labeling: characterization of large oligonucleotides and oligonucleotides containing modified nucleosides.通过高碘酸盐-磷酸酶消化和化学氚标记对非放射性RNA片段进行序列分析:大寡核苷酸和含修饰核苷的寡核苷酸的表征
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[Sequence determination of oligonucleotides].[寡核苷酸的序列测定]
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引用本文的文献

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本文引用的文献

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NUCLEOTIDE SEQUENCE ANALYSIS OF POLYRIBONUCLEOTIDES BY MEANS OF PERIODATE OXIDATION FOLLOWED BY CLEAVAGE WITH AN AMINE.通过高碘酸盐氧化随后用胺进行切割来对多聚核苷酸进行核苷酸序列分析。
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THE EFFECT OF UREA, FORMAMIDE, AND GLYCOLS ON THE SECONDARY BINDING FORCES IN THE ION-EXCHANGE CHROMATOGRAPHY OF POLYNUCLEOTIDES OF DEAE-CELLULOSE.尿素、甲酰胺和二醇对DEAE - 纤维素多核苷酸离子交换色谱中二级结合力的影响
Biochemistry. 1963 Jul-Aug;2:697-702. doi: 10.1021/bi00904a013.
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The reaction of methylamine with periodate-oxidized adenosine 5'-phosphate.
一种用于在聚乙烯亚胺(PEI)纤维素薄层上分离单磷酸核苷的改进方法。
Nucleic Acids Res. 1976 Nov;3(11):2915-21. doi: 10.1093/nar/3.11.2915.
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Use of specific endonuclease cleavage in RNA sequencing-an enzymic method for distinguishing between cytidine and uridine residues.在RNA测序中使用特异性核酸内切酶切割——一种区分胞嘧啶和尿嘧啶残基的酶法。
Nucleic Acids Res. 1977 Oct;4(10):3441-54. doi: 10.1093/nar/4.10.3441.
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A double-labeling procedure for sequence analysis of picomole amounts of nonradioactive RNA fragments.一种用于皮摩尔量非放射性RNA片段序列分析的双标记方法。
Nucleic Acids Res. 1976 Nov;3(11):2895-914. doi: 10.1093/nar/3.11.2895.
6
Wheat germ tRNAs containing uridine in place of ribothymidine: a characterization of an unusual class of eukaryotic tRNAs.含有尿苷而非核糖胸腺嘧啶的小麦胚芽转运RNA:一类异常真核转运RNA的特性
Nucleic Acids Res. 1978 Apr;5(4):1075-92. doi: 10.1093/nar/5.4.1075.
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A two-dimensional thin layer chromatographic procedure for the sequential analysis of oligonucleotides employing tritium post-labeling.一种采用氚后标记法对寡核苷酸进行顺序分析的二维薄层色谱法。
Nucleic Acids Res. 1977 Oct;4(10):3563-72. doi: 10.1093/nar/4.10.3563.
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Rapid print-readout technique for sequencing of RNA's containing modified nucleotides.用于对含修饰核苷酸的RNA进行测序的快速打印读出技术。
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Complex formation between ribosomal protein S1, oligo-and polynucleotides: chain length dependence and base specificity.核糖体蛋白S1与寡核苷酸和多核苷酸之间的复合物形成:链长依赖性和碱基特异性。
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Use of specific endonuclease cleavage in RNA sequencing.特定核酸内切酶切割在RNA测序中的应用。
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Biochemistry. 1963 Mar-Apr;2:344-50. doi: 10.1021/bi00902a029.
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Studies on polynucleotides. IV. Enzymic degradation; the stepwise action of venom phosphodiesterase on deoxyribo-oligonucleotides.多核苷酸研究。IV. 酶促降解;蛇毒磷酸二酯酶对脱氧核糖寡核苷酸的逐步作用。
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Primary sequence of glutamic acid tRNA II from Escherichia coli.来自大肠杆菌的谷氨酸tRNA II的一级序列。
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Nucleotides. XLIX. The reduction of the adduct of periodate-oxidised adenosine-5' phosphate and methylamine.核苷酸。XLIX。高碘酸盐氧化的5'-磷酸腺苷与甲胺加合物的还原反应
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