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Diffusion controlled reaction rates in spheroidal geometry. Application to repressor--operator association and membrane bound enzymes.

作者信息

Richter P H, Eigen M

出版信息

Biophys Chem. 1974 Oct;2(3):255-63. doi: 10.1016/0301-4622(74)80050-5.

DOI:10.1016/0301-4622(74)80050-5

PMID:4474030

Abstract

摘要

相似文献

Diffusion controlled reaction rates in spheroidal geometry. Application to repressor--operator association and membrane bound enzymes.

Biophys Chem. 1974 Oct;2(3):255-63. doi: 10.1016/0301-4622(74)80050-5.

Association kinetics with coupled diffusion III. Ionic-strength dependence of the lac repressor-operator association.

Biophys Chem. 1978 Sep;8(4):271-80. doi: 10.1016/0301-4622(78)80010-6.

Interaction of effecting ligands with lac repressor and repressor-operator complex.

Biochemistry. 1975 Apr 22;14(8):1700-12. doi: 10.1021/bi00679a024.

Minimal length of the lactose operator sequence for the specific recognition by the lactose repressor.

Proc Natl Acad Sci U S A. 1977 Mar;74(3):966-70. doi: 10.1073/pnas.74.3.966.

On the relation between effector concentration and the rate of induced enzyme synthesis.

Biophys J. 1971 Jan;11(1):11-27. doi: 10.1016/S0006-3495(71)86192-1.

Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions.

Biochemistry. 1981 Nov 24;20(24):6961-77. doi: 10.1021/bi00527a030.

Orientation of transcription of the lac operon and its repressor gene in Escherichia coli.

J Mol Biol. 1969 Feb 28;40(1):145-51. doi: 10.1016/0022-2836(69)90303-9.

DNA looping in cellular repression of transcription of the galactose operon.

Genes Dev. 1990 Mar;4(3):410-8. doi: 10.1101/gad.4.3.410.

lac Repressor-operator interaction. IX. The binding of lac repressor to operators containing Oc mutations.

J Mol Biol. 1974 May 15;85(2):231-48. doi: 10.1016/0022-2836(74)90362-3.

Structural uniqueness of lactose operator.

Nature. 1974 Nov 15;252(5480):205-9. doi: 10.1038/252205a0.

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Diffusion controlled reaction rates in spheroidal geometry. Application to repressor--operator association and membrane bound enzymes.

作者信息

Richter P H, Eigen M

出版信息

Biophys Chem. 1974 Oct;2(3):255-63. doi: 10.1016/0301-4622(74)80050-5.

DOI:10.1016/0301-4622(74)80050-5

PMID:4474030

Abstract

摘要

相似文献

Diffusion controlled reaction rates in spheroidal geometry. Application to repressor--operator association and membrane bound enzymes.

Biophys Chem. 1974 Oct;2(3):255-63. doi: 10.1016/0301-4622(74)80050-5.

Association kinetics with coupled diffusion III. Ionic-strength dependence of the lac repressor-operator association.

Biophys Chem. 1978 Sep;8(4):271-80. doi: 10.1016/0301-4622(78)80010-6.

Interaction of effecting ligands with lac repressor and repressor-operator complex.

Biochemistry. 1975 Apr 22;14(8):1700-12. doi: 10.1021/bi00679a024.

Minimal length of the lactose operator sequence for the specific recognition by the lactose repressor.

Proc Natl Acad Sci U S A. 1977 Mar;74(3):966-70. doi: 10.1073/pnas.74.3.966.

On the relation between effector concentration and the rate of induced enzyme synthesis.

Biophys J. 1971 Jan;11(1):11-27. doi: 10.1016/S0006-3495(71)86192-1.

Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions.

Biochemistry. 1981 Nov 24;20(24):6961-77. doi: 10.1021/bi00527a030.

Orientation of transcription of the lac operon and its repressor gene in Escherichia coli.

J Mol Biol. 1969 Feb 28;40(1):145-51. doi: 10.1016/0022-2836(69)90303-9.

DNA looping in cellular repression of transcription of the galactose operon.

Genes Dev. 1990 Mar;4(3):410-8. doi: 10.1101/gad.4.3.410.

lac Repressor-operator interaction. IX. The binding of lac repressor to operators containing Oc mutations.

J Mol Biol. 1974 May 15;85(2):231-48. doi: 10.1016/0022-2836(74)90362-3.

Structural uniqueness of lactose operator.

Nature. 1974 Nov 15;252(5480):205-9. doi: 10.1038/252205a0.

引用本文的文献

Skipping events impose repeated binding attempts: profound kinetic implications of protein-DNA conformational changes.

Nucleic Acids Res. 2024 Jul 8;52(12):6763-6776. doi: 10.1093/nar/gkae333.

Diffusion-Controlled Reactions: An Overview.

Molecules. 2023 Nov 13;28(22):7570. doi: 10.3390/molecules28227570.

Dynamics of chromosomal target search by a membrane-integrated one-component receptor.

PLoS Comput Biol. 2021 Feb 4;17(2):e1008680. doi: 10.1371/journal.pcbi.1008680. eCollection 2021 Feb.

Bacterial Vivisection: How Fluorescence-Based Imaging Techniques Shed a Light on the Inner Workings of Bacteria.

Microbiol Mol Biol Rev. 2020 Oct 28;84(4). doi: 10.1128/MMBR.00008-20. Print 2020 Nov 18.

Value of Temporal Information When Analyzing Reaction Coordinates.

J Chem Theory Comput. 2020 Oct 13;16(10):6077-6090. doi: 10.1021/acs.jctc.0c00678. Epub 2020 Sep 8.

Understanding the Robustness of Protein Diffusion on DNA and Microtubules.

Biophys J. 2020 Jun 16;118(12):2870-2871. doi: 10.1016/j.bpj.2020.05.005. Epub 2020 May 19.

Energetic funnel facilitates facilitated diffusion.

Nucleic Acids Res. 2018 Jan 25;46(2):558-567. doi: 10.1093/nar/gkx1220.

The mechanism and high-free-energy transition state of lac repressor-lac operator interaction.

Nucleic Acids Res. 2017 Dec 15;45(22):12671-12680. doi: 10.1093/nar/gkx862.

Bulk-mediated surface transport in the presence of bias.

J Chem Phys. 2017 Jul 7;147(1):014103. doi: 10.1063/1.4991730.

What have single-molecule studies taught us about gene expression?

Genes Dev. 2016 Aug 15;30(16):1796-810. doi: 10.1101/gad.281725.116.