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鸡卵清溶菌酶与钆(III)及钆(III)-N-乙酰-D-葡萄糖胺复合物的晶体结构

Crystal structures of hen egg-white lysozyme complexes with gadolinium(III) and gadolinium(III)-N-acetyl-D-glucosamine.

作者信息

Perkins S J, Johnson L N, Machin P A, Phillips D C

出版信息

Biochem J. 1979 Jul 1;181(1):21-36. doi: 10.1042/bj1810021.

Abstract

Analysis at 0.25 nm resolution of the crystal structures of lysozyme-Gd(III) and lysozyme-Gd(III)-N-acetyl-D-glucosamine (GlcNac), prepared by diffusion methods, show that there are two main binding positions for Gd(III), one of which is close to glutamic acid-35 and the other close to aspartic acid-52. The two sites are 0.36 nm part. There is no evidence for the weak binding of Gd(III) to any of the eight other carboxy groups of lysozyme. In the presence of Gd(III), the binding of GlcNac is similar to that observed for the binding of the beta-anomer in subsite C. There are numerous small conformational changes in the protein on binding (Gd(III) and the sugar, and these have been quantified to a first approximation by real-space refinement. These changes are similar in both structures, and involve, among other small movements, shifts of one of the disulphide bridges by up to 0.05 nm. The movement of residues 70--74 observed in the binary complex of lysozyme-GlcNac [Perkins, Johnson, Machin & Phillips (1978) Biochem. J. 173-617] is not observed in the ternary complex of lysozyme-Gd(III)-GlcNac. The nature of the lysozyme-Gd(III) complex is discussed in the light of evidence from other crystallographic studies and n.m.r. solution studies. Preliminary findings for a lysozyme-Gd(III) complex prepared by co-crystallization methods are reported.

摘要

通过扩散法制备的溶菌酶 - 钆(III)和溶菌酶 - 钆(III)-N - 乙酰 - D - 葡糖胺(GlcNac)晶体结构在0.25纳米分辨率下的分析表明,钆(III)有两个主要结合位点,其中一个靠近谷氨酸 - 35,另一个靠近天冬氨酸 - 52。这两个位点相距0.36纳米。没有证据表明钆(III)与溶菌酶的其他八个羧基中的任何一个有弱结合。在钆(III)存在的情况下,GlcNac的结合与在亚位点C中观察到的β - 异头物的结合相似。蛋白质在结合钆(III)和糖时存在许多小的构象变化,并且通过实空间精修已对这些变化进行了初步定量。这两种结构中的这些变化相似,并且除其他小的移动外,还包括一个二硫键移动多达0.05纳米。在溶菌酶 - GlcNac二元复合物[珀金斯、约翰逊、马钦和菲利普斯(1978年)《生物化学杂志》173 - 617]中观察到的70 - 74位残基的移动在溶菌酶 - 钆(III)-GlcNac三元复合物中未观察到。根据其他晶体学研究和核磁共振溶液研究的证据讨论了溶菌酶 - 钆(III)复合物的性质。报道了通过共结晶法制备的溶菌酶 - 钆(III)复合物的初步研究结果。

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本文引用的文献

1
The crystal structure of N-acetyl-alpha-D-glucosamine.N-乙酰-α-D-葡萄糖胺的晶体结构
Acta Crystallogr. 1966 Dec 10;21(6):885-91. doi: 10.1107/s0365110x66004146.
4
Real-space refinement of the structure of hen egg-white lysozyme.鸡蛋清溶菌酶结构的实空间精修
J Mol Biol. 1974 Jan 25;82(3):371-91. doi: 10.1016/0022-2836(74)90598-1.
8
Binding of divalent copper ions to aspartic acid residue 52 in hen egg-white lysozyme.
J Mol Biol. 1974 Aug 5;87(2):357-68. doi: 10.1016/0022-2836(74)90155-7.

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