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从支原体(Kid株)中对天然rRNA和tRNA顺反子进行部分纯化。

Partial purification of native rRNA and tRNA cistrons from mycoplasma sp. (Kid).

作者信息

Ryan J L, Morowitz H J

出版信息

Proc Natl Acad Sci U S A. 1969 Aug;63(4):1282-9. doi: 10.1073/pnas.63.4.1282.

DOI:10.1073/pnas.63.4.1282
PMID:5260931
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC223462/
Abstract

Precise optical melting profiles of purified DNA from Mycoplasma sp. (Kid) show a secondary hyperchromic rise, corresponding to 1.4 per cent of the total DNA, occurring at 88 degrees C, while the bulk of the DNA melts at 79.5 degrees C, indicating an average base composition of 24.9 per cent guanine-cytosine (G-C). A method is presented, using sonication followed by hydroxyapatite column chromatography, for the partial purification of regions of a genome which contain significantly higher G-C than the average value for the genome. The procedure does not involve denaturation and renaturation of the high G-C material so that purified DNA is in its native, double-stranded state and has a normal melting profile. When applied to Mycoplasma sp. (Kid), the method yielded a fraction of native DNA enriched 40 times with respect to those regions coding for rRNA and tRNA. This enriched DNA has a saturation hybridization value of 15.9 per cent with Kid rRNA plus tRNA. The saturation hybridization values of the bulk DNA with rRNA and tRNA are 0.26 per cent and 0.16 per cent, respectively. Based on a genome size of 6.84 x 10(8), obtained by electron microscopy, this indicates that Mycoplasma sp. (Kid) contains only enough ribosomal DNA to code for one set of 23S plus 16S rRNA and only enough DNA complementary to tRNA to code for 44 different tRNA molecules.

摘要

来自支原体属(Kid株)的纯化DNA的精确光学解链图谱显示,在88℃时出现了二次增色上升,相当于总DNA的1.4%,而大部分DNA在79.5℃时解链,表明鸟嘌呤-胞嘧啶(G-C)的平均碱基组成为24.9%。本文介绍了一种方法,通过超声处理后进行羟基磷灰石柱色谱法,对基因组中G-C含量显著高于基因组平均值的区域进行部分纯化。该方法不涉及高G-C含量物质的变性和复性,因此纯化后的DNA处于天然双链状态,具有正常的解链图谱。当应用于支原体属(Kid株)时,该方法得到了相对于编码rRNA和tRNA的区域富集40倍的天然DNA片段。这种富集的DNA与Kid rRNA加tRNA的饱和杂交值为15.9%。总体DNA与rRNA和tRNA的饱和杂交值分别为0.26%和0.16%。基于电子显微镜获得的6.84×10⁸的基因组大小,这表明支原体属(Kid株)仅含有足够编码一套23S加16S rRNA的核糖体DNA,以及仅含有足够与tRNA互补以编码44种不同tRNA分子的DNA。

相似文献

1
Partial purification of native rRNA and tRNA cistrons from mycoplasma sp. (Kid).从支原体(Kid株)中对天然rRNA和tRNA顺反子进行部分纯化。
Proc Natl Acad Sci U S A. 1969 Aug;63(4):1282-9. doi: 10.1073/pnas.63.4.1282.
2
The phenylalanine tRNA from Mycoplasma sp. (Kid): a tRNA lacking hypermodified nucleosides functional in protein synthesis.来自支原体(Kid)的苯丙氨酸转运RNA:一种缺乏在蛋白质合成中起作用的超修饰核苷的转运RNA。
Nucleic Acids Res. 1974 Dec;1(12):1713-20.
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Formylatable methionine transfer RNA from Mycoplasma: purification and comparison of partial nucleotide sequences with those of other prokaryotic initiator tRNAs.支原体中可甲酰化的甲硫氨酸转运RNA:纯化及其部分核苷酸序列与其他原核起始tRNA的比较
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The nucleotide sequence of phenylalanine tRNA from Mycoplasma sp. (Kid).来自支原体(Kid株)的苯丙氨酸tRNA的核苷酸序列。
Nucleic Acids Res. 1974 Dec;1(12):1721-32.
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Ribonucleic acid from the higher plant Matthiola incana. Molecular weight measurements and DNA-RNA hybridisation studies.来自高等植物紫罗兰的核糖核酸。分子量测定及DNA-RNA杂交研究。
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6
Some features of DNA-tRNA hybrids in the rat.大鼠中DNA - tRNA杂交体的一些特征。
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tRNA genes are found between 16S and 23S rRNA genes in Bacillus subtilis.在枯草芽孢杆菌中,转运RNA基因位于16S和23S核糖体RNA基因之间。
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Organization of the regions flanking the rRNA cistrons of Mycoplasma strain PG50.支原体菌株PG50的rRNA顺反子侧翼区域的组织
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Characterization of the mycoplasma genome.支原体基因组的特征描述。
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引用本文的文献

1
The protein composition of Mycoplasma capricolum.山羊支原体的蛋白质组成。
Mol Gen Genet. 1982;188(1):7-11. doi: 10.1007/BF00332989.
2
Phylogenetic analysis of the mycoplasmas.支原体的系统发育分析。
Proc Natl Acad Sci U S A. 1980 Jan;77(1):494-8. doi: 10.1073/pnas.77.1.494.
3
Ribosomal RNA genes in Mycoplasma.支原体中的核糖体RNA基因。
Nucleic Acids Res. 1982 Jul 24;10(14):4215-22. doi: 10.1093/nar/10.14.4215.
4
The number of ribosomal RNA genes in Mycoplasma capricolum.山羊支原体中核糖体RNA基因的数量。
Mol Gen Genet. 1981;182(3):502-4. doi: 10.1007/BF00293942.
5
Nucleotide sequence of the rrnB 16S ribosomal RNA gene from Mycoplasma capricolum.来自山羊支原体的rrnB 16S核糖体RNA基因的核苷酸序列。
Mol Gen Genet. 1984;196(2):317-22. doi: 10.1007/BF00328065.
6
Organization of ribosomal RNA genes in Mycoplasma capricolum.山羊支原体中核糖体RNA基因的组织
Mol Gen Genet. 1984;196(2):311-6. doi: 10.1007/BF00328064.
7
Evolution of mycoplasmas and genome losses.支原体的进化与基因组丢失
Yale J Biol Med. 1983 Sep-Dec;56(5-6):377-83.
8
The ribosomal genes of Mycoplasma capricolum.山羊支原体的核糖体基因。
Yale J Biol Med. 1983 Sep-Dec;56(5-6):373-6.
9
Characterization of the mycoplasma genome.支原体基因组的特征描述。
Yale J Biol Med. 1983 Sep-Dec;56(5-6):357-66.
10
Mycoplasmas (Mollicutes) have a low number of rRNA genes.支原体(柔膜菌纲)的核糖体RNA基因数量较少。
J Bacteriol. 1984 Apr;158(1):376-8. doi: 10.1128/jb.158.1.376-378.1984.

本文引用的文献

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The nucleotide composition of ribonucleic acids of soluble and particle fractions in several species of bacteria.几种细菌中可溶性和颗粒部分核糖核酸的核苷酸组成。
Biochim Biophys Acta. 1962 Jan 22;55:62-70. doi: 10.1016/0006-3002(62)90931-9.
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Proc Natl Acad Sci U S A. 1964 Aug;52(2):486-93. doi: 10.1073/pnas.52.2.486.
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RESTRICTION OF IN VIVO GENETIC TRANSCRIPTION TO ONE OF THE COMPLEMENTARY STRANDS OF DNA.体内基因转录限制于DNA互补链之一。
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J Mol Biol. 1967 Jan 28;23(2):191-9. doi: 10.1016/s0022-2836(67)80026-3.
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Orientation and control of transcription in E. coli phage lambda.大肠杆菌噬菌体λ转录的方向与调控
Nature. 1969 Mar 1;221(5183):823-5. doi: 10.1038/221823a0.
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Ribonucleic acids of Mycoplasma gallisepticum strain A5969.鸡败血支原体A5969株的核糖核酸
Am J Vet Res. 1969 Feb;30(2):287-93.
10
Molecular genetic studies of relationships among mycoplasma, L-forms and bacteria.支原体、L型菌和细菌之间关系的分子遗传学研究。
Ann N Y Acad Sci. 1967 Jul 28;143(1):21-30. doi: 10.1111/j.1749-6632.1967.tb27639.x.