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使用纺锤菌素与氯化铯梯度分析法分析DNA及其在多头绒泡菌核糖体DNA限制性核酸酶片段中的应用。

The use of netropsin with CsCl gradients for the analysis of DNA and its application to restriction nuclease fragments of ribosomal DNA from Physarum polycephalum.

作者信息

Matthews H R, Johnson E M, Steer W M, Bradbury E M, Allfrey V G

出版信息

Eur J Biochem. 1978 Jan 16;82(2):569-76. doi: 10.1111/j.1432-1033.1978.tb12052.x.

DOI:10.1111/j.1432-1033.1978.tb12052.x
PMID:564266
Abstract

Netropsin binds to DNA in caesium chloride density gradients and reduces the density of the DNA. The DNA is saturated at a netropsin/DNA weight ratio of about 6 and the change in density, deltarho, at saturation is given by deltarho = -109 (dA + dT content)1.87 mg/ml for the six DNAs tested covering dA + dT contents from 0.28 to 0.69. At lower netropsin/DNA ratios the observed density shifts are consistent with a two-site model for netropsin binding to DNA. Netropsin approximately doubles the resolution of Physarum polycephalum nucleolar satellite DNA from main-band DNA. The fragments of P. polycephalum nucleolar satellite DNA obtained with the restriction endonuclease HindIII do not separate on CsCl gradients, even in the presence of netropsin, which shows that the transcribed and non-transcribed sequences in this DNA have similar nucleotide compositions.

摘要

纺锤菌素在氯化铯密度梯度中与DNA结合,并降低DNA的密度。在纺锤菌素/DNA重量比约为6时DNA达到饱和,对于所测试的六种DNA(涵盖dA + dT含量从0.28至0.69),饱和时的密度变化Δρ由Δρ = -109(dA + dT含量)1.87 mg/ml给出。在较低的纺锤菌素/DNA比例下,观察到的密度变化与纺锤菌素结合DNA的双位点模型一致。纺锤菌素使多头绒泡菌核仁卫星DNA与主带DNA的分辨率大约提高了一倍。用限制性内切酶HindIII获得的多头绒泡菌核仁卫星DNA片段在CsCl梯度中无法分离,即使存在纺锤菌素,这表明该DNA中的转录和非转录序列具有相似的核苷酸组成。

相似文献

1
The use of netropsin with CsCl gradients for the analysis of DNA and its application to restriction nuclease fragments of ribosomal DNA from Physarum polycephalum.使用纺锤菌素与氯化铯梯度分析法分析DNA及其在多头绒泡菌核糖体DNA限制性核酸酶片段中的应用。
Eur J Biochem. 1978 Jan 16;82(2):569-76. doi: 10.1111/j.1432-1033.1978.tb12052.x.
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Ribosomal genes in Physarum polycephalum: transcribed and non-transcribed sequences have similar base compositions.多头绒泡菌中的核糖体基因:转录序列和非转录序列具有相似的碱基组成。
Eur J Biochem. 1978 Aug 1;88(2):599-605. doi: 10.1111/j.1432-1033.1978.tb12486.x.
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Ribosomal RNA genes in the amoebal and plasmodial forms of the slime mould Physarum polycephalum.多头绒泡菌的变形虫状和原质团状形态中的核糖体RNA基因。
Eur J Biochem. 1975 Feb 21;51(2):459-65. doi: 10.1111/j.1432-1033.1975.tb03945.x.
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Cat satellite DNA. Isolation using netropsin with CsCl gradients.猫卫星DNA。使用纺锤菌素结合氯化铯梯度进行分离。
Biochim Biophys Acta. 1980 Feb 29;606(2):228-35. doi: 10.1016/0005-2787(80)90032-5.
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Subunit structure of Physarum polycephalum chromatin.多头绒泡菌染色质的亚基结构。
FEBS Lett. 1976 Mar 1;62(3):251-54. doi: 10.1016/0014-5793(76)80068-3.
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Circular DNA and rolling circles in nucleolar rDNA from mitotic nuclei of Physarum polycephalum.多头绒泡菌有丝分裂细胞核核仁rDNA中的环状DNA和滚环
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Nucleoprotein chromatin subunit from Physarum polycephalum.多头绒泡菌的核蛋白染色质亚基。
Biochim Biophys Acta. 1977 Mar 2;475(1):131-8. doi: 10.1016/0005-2787(77)90347-1.
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Base composition heterogeneity of mammalian DNAs in CsCl-netropsin density gradient.哺乳动物DNA在氯化铯-纺锤菌素密度梯度中的碱基组成异质性
Nucleic Acids Res. 1976 Mar;3(3):835-45. doi: 10.1093/nar/3.3.835.
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Organisation of genes for ribosomal RNA in Physarum polycephalum.多头绒泡菌核糖体RNA基因的组织
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Structure of ribosomal DNA in Physarum polycephalum.多头绒泡菌核糖体DNA的结构
J Mol Biol. 1976 Sep 25;106(3):567-87. doi: 10.1016/0022-2836(76)90252-7.

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Mol Cell Biol. 1981 Feb;1(2):121-7. doi: 10.1128/mcb.1.2.121-127.1981.
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Influence of nucleotide sequence on dA.dT-specific binding of Netropsin to double stranded DNA.核苷酸序列对纺锤菌素与双链DNA的dA.dT特异性结合的影响。
Nucleic Acids Res. 1979 Jun 25;6(8):2831-7. doi: 10.1093/nar/6.8.2831.
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Antibiotic induced electrophoretic mobility shifts of DNA restriction fragments.
抗生素诱导的DNA限制性片段的电泳迁移率变化
Nucleic Acids Res. 1979;6(5):1869-79. doi: 10.1093/nar/6.5.1869.